View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352-Insertion-3 (Length: 287)

Name: NF3352-Insertion-3
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352-Insertion-3
NF3352-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-287)||(2017269-2017548)
[»] chr3 (8 HSPs)
chr3 (116-220)||(40570921-40571025)
chr3 (116-220)||(40577344-40577448)
chr3 (149-222)||(40566267-40566340)
chr3 (8-82)||(40577248-40577322)
chr3 (1-90)||(40566126-40566214)
chr3 (147-220)||(40595654-40595727)
chr3 (8-82)||(40570825-40570899)
chr3 (159-211)||(40600307-40600359)
[»] chr5 (2 HSPs)
chr5 (116-220)||(8490588-8490692)
chr5 (8-82)||(8490492-8490566)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 2017548 - 2017269
Alignment:
Q  8 aaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcacctaagcannnnnnnnn 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||             
T  2017548 aaagtgtggctctgtcacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgcaccaaagcatcttcttct 2017449  T
Q  108 nnnnnnnnaacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtag 207  Q
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017448 tcttcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtag 2017349  T
Q  208 ccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacatcttcccgtctca 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2017348 ccagcgattgctacgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacattttcccgtctca 2017269  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 40570921 - 40571025
Alignment:
Q  116 aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat 215  Q
    |||||||||| |  |||| ||| ||||||| |||||||||| ||| ||||||||||| || || ||||||||||||| ||||||||||||||| || |||    
T  40570921 aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgat 40571020  T
Q  216 tgcta 220  Q
    |||||    
T  40571021 tgcta 40571025  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 40577344 - 40577448
Alignment:
Q  116 aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat 215  Q
    |||||||||| |  |||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| |  ||||||||||||||||||||| ||    
T  40577344 aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctat 40577443  T
Q  216 tgcta 220  Q
    |||||    
T  40577444 tgcta 40577448  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 40566267 - 40566340
Alignment:
Q  149 taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacg 222  Q
    |||||||| ||||||||| ||||| ||  |||||||| |||  |||||||||||||||||||||||||||||||    
T  40566267 taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacg 40566340  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 40577248 - 40577322
Alignment:
Q  8 aaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat 82  Q
    ||||||||||  || ||| |||||||| ||||||||||||||||||||||||||  | |||||||| ||||||||    
T  40577248 aaagtgtggcaatgtcactattcccttcccatttggaaccaccaaggattgttctctagacaacacctttctcat 40577322  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40566126 - 40566214
Alignment:
Q  1 cccaacaaaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcataaattgca 90  Q
    |||||||||| ||||| || | ||| ||||||||||||||||||||||| ||| |||||||| | ||||| || |||||||| |||||||    
T  40566126 cccaacaaaa-tgtggttccgtcaccattccctttccatttggaaccactaagaattgttccctcgacaatacctttctcattaattgca 40566214  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 40595654 - 40595727
Alignment:
Q  147 actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta 220  Q
    |||||||||  |||| |||| || || ||| |||||||||||| |||||||||||||||||||||  |||||||    
T  40595654 actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgcta 40595727  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 40570825 - 40570899
Alignment:
Q  8 aaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat 82  Q
    ||||||||||  || ||| |||||||| |||||||||||||||||  |||||||  | |||||||| ||||||||    
T  40570825 aaagtgtggcaatgtcactattcccttcccatttggaaccaccaataattgttctctagacaacacctttctcat 40570899  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 40600307 - 40600359
Alignment:
Q  159 gtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag 211  Q
    |||||||| ||||| ||  |||||||| ||||||| |||||||||||||||||    
T  40600307 gtcctaaatatctcactcaatggtgaattgcgtgtcgcatggccagtagccag 40600359  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 8490588 - 8490692
Alignment:
Q  116 aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat 215  Q
    |||||||||| |  |||| ||| ||||||| | |||||||| ||| ||||||||||| || ||||||||||||| ||||||||||||| ||| ||| |||    
T  8490588 aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgat 8490687  T
Q  216 tgcta 220  Q
    |||||    
T  8490688 tgcta 8490692  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 8490492 - 8490566
Alignment:
Q  8 aaagtgtggctctgccacaattccctttccatttggaaccaccaaggattgttccttggacaacacttttctcat 82  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||||  ||||||  | |||||||| ||||||||    
T  8490492 aaagtgtggctctgtcactattcccttcccatttggaaccaccaagagttgttctctagacaacacctttctcat 8490566  T

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