View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352R-Insertion-2 (Length: 859)
Name: NF3352R-Insertion-2
Description: NF3352R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352R-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 790; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 9 - 859
Target Start/End: Complemental strand, 53096694 - 53095846
Alignment:
| Q |
9 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
108 |
Q |
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| T |
53096694 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
53096595 |
T |
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| Q |
109 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgcactccactcaaatgcctattagttgtttccaataata |
208 |
Q |
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| T |
53096594 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgctctccactcaaatgcctattagttgtttccaataata |
53096495 |
T |
|
| Q |
209 |
aatgtttaatgacaatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
308 |
Q |
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| T |
53096494 |
aatgtttaatgacgatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
53096395 |
T |
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| Q |
309 |
agaagttccnnnnnnncatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
408 |
Q |
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| T |
53096394 |
agaagttccaaaaaaacatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
53096295 |
T |
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| Q |
409 |
caaaactcaaatgggactagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttc |
508 |
Q |
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| T |
53096294 |
caaaactcaaatgggacgagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttc |
53096195 |
T |
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| Q |
509 |
agcagcagtgccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggt |
608 |
Q |
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| T |
53096194 |
agcagcagtgccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggt |
53096095 |
T |
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| Q |
609 |
aatgatgtccccccttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttcttgtccttgtccttgtcggctggagg |
708 |
Q |
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| T |
53096094 |
aatgatgtccccccttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttcttgtccttgtccttgtcggctggagg |
53095995 |
T |
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| Q |
709 |
taacgggttaaagggttgaagactgttttaccaaaggtggaagtaggaggttagaacagttctcaaaatgtcaagtgccttattttcggtctatacagca |
808 |
Q |
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| T |
53095994 |
taacgggttaaa-ggttgaagactgttttaccaaaggtggaattaggaggttagaacagttctcaaaatctcaagtgccttattttcggtctatacaaca |
53095896 |
T |
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| Q |
809 |
gcagcatgggctcatgccaataccaacaacttccaccaaatcagtatacct |
859 |
Q |
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| T |
53095895 |
gcagcatgggctcatgccaataccaacaac-tccaccaaatcagtatacct |
53095846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 330 - 479
Target Start/End: Original strand, 1369335 - 1369483
Alignment:
| Q |
330 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
429 |
Q |
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|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
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| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
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| Q |
430 |
aatggaaatagttttgatgttggaacagttcattctgctagtttggacat |
479 |
Q |
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| T |
1369434 |
aatggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 622 - 684
Target Start/End: Complemental strand, 26143364 - 26143302
Alignment:
| Q |
622 |
cttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttctt |
684 |
Q |
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| T |
26143364 |
cttgttacctcttcctcatgctctgatgattatatttcatattctgcaaagcttcaacttctt |
26143302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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