View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352R-Insertion-7 (Length: 329)

Name: NF3352R-Insertion-7
Description: NF3352R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352R-Insertion-7
NF3352R-Insertion-7
[»] chr1 (2 HSPs)
chr1 (9-329)||(31014379-31014698)
chr1 (9-329)||(31192632-31192955)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 31014698 - 31014379
Alignment:
Q  9 catctgaactgatgatgggcagaagacaaagtaaaatgcttacagggaacaataatcactgcaaaataacattgttttatgtcaacaccttttcattttc 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31014698 catctgaactgatgatgggcagaagacaaagtaaaatgcataccgggaacaataatcactgcaaaataacattgtcttatgtcaacaccttttcattttc 31014599  T
Q  109 attttatgttcaaaactattactgcagaaaatatacgcaaacttcaagtacgtccctgcacatcaaatgcctataacattgatataaacctcattgcaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||    
T  31014598 attttatgttcaaaactattactgcagaaaatatacgcaaacttcaagtacgtccctgcacatcaaatgcctataacattgatataaactacactgcaga 31014499  T
Q  209 aactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaatttg 308  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  31014498 aactatttcttaaata-catatagcacagtggatataatgttattttcttgaaggatatgtcatagtccctacaaaagataattcaagcacagaaatttg 31014400  T
Q  309 accctcttttgctcttttgtt 329  Q
    |||||||||||||||||||||    
T  31014399 accctcttttgctcttttgtt 31014379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 31192955 - 31192632
Alignment:
Q  9 catctgaactgatgatgggcagaagacaaagtaaaatgcttacagggaacaataatcactgcaaaataacattgttttatgtcaacaccttttcattttc 108  Q
    ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  31192955 catctgaactgatgatgggcagaagacaaagtaaaattcataccgggaacaataatcactgcaaaataacattgtcttttgtcaacaccttttcattttc 31192856  T
Q  109 attttatgttcaaaactattactgcagaaaatatacgcaaacttcaagtacg---tccctgcacatcaaatgcctataacattgatataaacctcattgc 205  Q
    || || |||||||||||||| ||||||||||| |||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||    
T  31192855 atgttgtgttcaaaactattgctgcagaaaatttacgcaaacttcaagtgcggcgtccctgcacatcaaatgcctataacattgatataaacctcattgc 31192756  T
Q  206 agaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192755 agaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaat 31192656  T
Q  306 ttgaccctcttttgctcttttgtt 329  Q
    ||||||||||||||||||||||||    
T  31192655 ttgaccctcttttgctcttttgtt 31192632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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