View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_10 (Length: 446)
Name: NF3352_high_10
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 221 - 428
Target Start/End: Complemental strand, 2017756 - 2017544
Alignment:
| Q |
221 |
tagcattacgtacaacaagaagaaatagattaaatacttnnnnnnnnnntccaatgatttgtaaaagttataa-----gatgaacctgaaaaattagcaa |
315 |
Q |
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| T |
2017756 |
tagcattacgtacaacaagaagaaatagattaaatacttaaaaaaaaaatccaatgatttgtaaaagttataacgaacgatgaacctgaaaaattagcaa |
2017657 |
T |
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| Q |
316 |
aatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaactcagcaactatctctcccaaac |
415 |
Q |
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| T |
2017656 |
aatcatgcacatggctgtggcctcaaatcagttgctgcagctggtagtttttgcggtcttttttgcaaaagcaacaactcagcaactatctctcccaaac |
2017557 |
T |
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| Q |
416 |
tgcacaacaaagt |
428 |
Q |
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||||||||||||| |
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| T |
2017556 |
tgcacaacaaagt |
2017544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2017912 - 2017758
Alignment:
| Q |
1 |
acagaaacataatatataaacattttttgaccggacataatgtataaacatgactatgttgtaatgtatttttaaattttatatgcagaatgggtcagaa |
100 |
Q |
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| T |
2017912 |
acagaaacataatatataaacattttttgaccggacataatgtataaacatgactatgttgtaatgtatttttaaattttatatgcagaatgggtcagaa |
2017813 |
T |
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| Q |
101 |
gacacatttttatttcccagtatctaacttttgttcactctatcaaaattcaaaa |
155 |
Q |
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| T |
2017812 |
gacacatttttatttcccagtatctagtttttgttcactctatcaaaattcaaaa |
2017758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 8490024 - 8490076
Alignment:
| Q |
7 |
acataatatataaacatt--ttttgaccggacataatgtataaacatgactat |
57 |
Q |
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| T |
8490024 |
acataatatataaacaatatttttgactggacataatatataaacatgactat |
8490076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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