View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_11 (Length: 446)
Name: NF3352_high_11
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 6916265 - 6915848
Alignment:
| Q |
19 |
gcaagttcactggaatcaacatcatgagcagcaccatttgtcaagacaactcggagattttcaactggatgtccaatcaaggcaccagagttggcagctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6916265 |
gcaagttcactggaatcaacatcatgagcagcaccatctgtcaagacaactcggagattttgaactggatgtccaatcaaggcaccagagttggcagctt |
6916166 |
T |
|
| Q |
119 |
ctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916165 |
ctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctgacccagcaggaag |
6916066 |
T |
|
| Q |
219 |
tggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916065 |
tggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctg |
6915966 |
T |
|
| Q |
319 |
aagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915965 |
aagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatga |
6915866 |
T |
|
| Q |
419 |
ttgtttgcccactctctg |
436 |
Q |
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| T |
6915865 |
ttgtttgcccactctctg |
6915848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
232 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
331 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
332 |
gctttccaactgtagcatcaacc |
354 |
Q |
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||||||||||||||||||||||| |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 15038314 - 15038438
Alignment:
| Q |
106 |
gagttggcagcttctttaaaacctttctcaattgcagggaaaaaattcgatggaatagcttgaccaacaagcatgttgtcaaattcaaacttagttcctg |
205 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
15038314 |
gagttggcagcttctataaaacctttctcaattgcagcgaaaaaatttgatggaatagcttgaccaacaagcatgttttcaaattcaaacttagtttctg |
15038413 |
T |
|
| Q |
206 |
acccagcaggaagtggttcaatata |
230 |
Q |
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|||||||||| |||||||||||||| |
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| T |
15038414 |
acccagcagggagtggttcaatata |
15038438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 15038086 - 15038167
Alignment:
| Q |
19 |
gcaagttcactggaatcaacatcatgagcagcaccatttgtcaagacaactcggagattttcaactggatgtccaatcaagg |
100 |
Q |
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||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
15038086 |
gcaagctcactggaatcaacagcatgagcagcaccatctgtcaagacaactcggagattttcaacgggatgtccaattaagg |
15038167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
368 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
422 |
Q |
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|||||| || |||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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