View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_high_12 (Length: 443)

Name: NF3352_high_12
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_high_12
NF3352_high_12
[»] chr3 (4 HSPs)
chr3 (18-305)||(29554454-29554741)
chr3 (362-435)||(29554798-29554871)
chr3 (18-104)||(29539645-29539731)
chr3 (111-175)||(29556787-29556851)
[»] chr2 (1 HSPs)
chr2 (26-104)||(42194885-42194963)
[»] chr5 (3 HSPs)
chr5 (205-283)||(42779948-42780026)
chr5 (368-435)||(42779797-42779863)
chr5 (233-276)||(27313979-27314022)
[»] chr8 (1 HSPs)
chr8 (119-154)||(44374663-44374699)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 29554454 - 29554741
Alignment:
Q  18 caaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatgtcttctgctcaaaggcctgtcagatgttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29554454 caaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacaaatgtcttctgctcaaaggcctgtcagatgttag 29554553  T
Q  118 tttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaactatatgaaactctaattgtcgtctttgttttttgttttgttatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29554554 tttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaactatatgaaactctaattgtcgtctttgttttttgttttgttatt 29554653  T
Q  218 gtctcagaaacctagattgttaacatggtatcaaaagctttcttcgatccaccttgaactacggtttcacttccattattgagttcct 305  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29554654 gtctctgaaacctagattgttaacatggtatcaaaagctttgttcgatccaccttgaactacggtttcacttccattattgagttcct 29554741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 29554798 - 29554871
Alignment:
Q  362 ttctgttgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatctgtgct 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29554798 ttctgttgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatttgtgct 29554871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 29539645 - 29539731
Alignment:
Q  18 caaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatgtcttctgctcaaaggcc 104  Q
    ||||| ||||||||| ||| | ||||| | ||||||||||||||||||| |||| ||||| ||||||||| ||||| ||||||||||    
T  29539645 caaacatcggatctgccacagcatgcgcggtgtgcaatcaacagcgtcaatgacccactagaaacacatgccttctactcaaaggcc 29539731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 29556787 - 29556851
Alignment:
Q  111 atgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaacta 175  Q
    ||||| ||||||| || || | |||||||||||||||||||||| | ||| |||||| |||||||    
T  29556787 atgtttgtttagaatccataaggttttatttatattcttttatacccttttgtaatgttaaacta 29556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 42194885 - 42194963
Alignment:
Q  26 ggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatgtcttctgctcaaaggcc 104  Q
    ||||||| ||| | ||||| ||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||    
T  42194885 ggatctgccaccgcatgcgcgatgtgcaatcaagagcggcaatgacccactataaacacatgtcttctgctcaaaggcc 42194963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 42780026 - 42779948
Alignment:
Q  205 ttgttttgttattgtctcagaaacctagattgttaacatggtatcaaaagctttcttcgatccaccttgaactacggtt 283  Q
    |||||||||||||||||  |||||||||| | ||||| ||||||||| |||||| || |||||| ||| ||||||||||    
T  42780026 ttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggtt 42779948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 42779863 - 42779797
Alignment:
Q  368 tgaagaaaatttaatctgttgcttttgttcagttagcaatatgtggtctattcttttgaatctgtgct 435  Q
    ||||||||||| ||| |||||||||| ||  | |||||||||||||||||||||||||||| ||||||    
T  42779863 tgaagaaaattgaatttgttgctttttttt-gctagcaatatgtggtctattcttttgaatttgtgct 42779797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 27313979 - 27314022
Alignment:
Q  233 attgttaacatggtatcaaaagctttcttcgatccaccttgaac 276  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||    
T  27313979 attgttaacatggtatcaagagctttgttcgatcctccttgaac 27314022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 44374663 - 44374699
Alignment:
Q  119 ttagagtctattatgttttatt-tatattcttttata 154  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44374663 ttagagtctattatgttttattatatattcttttata 44374699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University