View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_13 (Length: 443)
Name: NF3352_high_13
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 53656527 - 53656125
Alignment:
| Q |
17 |
agtaagcttgcaagaatcacatagcttaggtggcacactccagccgctacgaagactctttagtcctcctctttcaatacccatgttatgttatgttatg |
116 |
Q |
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| T |
53656527 |
agtaagcttgcaagaatcacatagcttaggtggcacactccagccgccacgaagactctttagtcctcctctttcaatacccatgttatgttatg----- |
53656433 |
T |
|
| Q |
117 |
ttatgattctatgattaatgaaatcgcttatttatttttgttacaaacgcgcttcttagcttattagaagagtgggaggataatgttgtttgaatgaagt |
216 |
Q |
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| T |
53656432 |
-----attctatgattaatgaaatcgcttatttatttttgttacaaacgcgcttcttagcttattagaagagtgggaggataatgttgtttgaatgaagt |
53656338 |
T |
|
| Q |
217 |
tgggtgagtttgtttgattactttgggtgcggtttttgtaatatgtatgtatagtcaagtgactggtcatagagaggaaatctaggtaatgacgaatgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53656337 |
tgggtgagtttgtttgattactttgggtgcggtttttgtaatat----gtatagtcaagtgactggtcatagagaggaaatctaggtaatgacgaatgaa |
53656242 |
T |
|
| Q |
317 |
aagaagacacgtgggtgagtattggccatgtaaatggttcgctcaaaacaacaaagtattnnnnnnntattagatatgtattggggagtagtagttgtca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
53656241 |
aagaagacacgtgggtgagtattggccatgtaaatggttcgctcaaaacaacaaagtattaaaaaaatattagatatatattggggagtagtagttgtca |
53656142 |
T |
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| Q |
417 |
tcgtgttttgtctgtgc |
433 |
Q |
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| T |
53656141 |
tcgtgttttgtctgtgc |
53656125 |
T |
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