View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_20 (Length: 381)
Name: NF3352_high_20
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 29668622 - 29668969
Alignment:
| Q |
17 |
tgttggcgagagttcatgcaagaatatatcttaatcaatggttttacttcggtacatgttgagattataatttagtgttctattattctcacnnnnnnnn |
116 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29668622 |
tgttggtgagagttcatgcaagaatatctcttaatcaatggttttacttcggtacatgttgagattataatttagtgttctattattctcacaaaaaaaa |
29668721 |
T |
|
| Q |
117 |
ttgctcaacatataggttcctctacccaggtctaatatggaggtttcaaaaacttttccgcattggatccgaaaaaatgttaaaacaaagtctccaaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
29668722 |
ttgctcaacatataggttcctctacccaggtctaatatggaggtttcaaaaacttttcggcataggatccgaaaaaatgttaaaacaaagtctccaaatc |
29668821 |
T |
|
| Q |
217 |
gtcgaaacatacatgaacaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29668822 |
gtcgaaacatacatgaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagc |
29668921 |
T |
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| Q |
317 |
caatcaacgccacgattctacaacacatcatcttaaacttcatccttg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29668922 |
caatcaacgccacgattctacaacacatcatcttaaacttcatccttg |
29668969 |
T |
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