View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_23 (Length: 346)
Name: NF3352_high_23
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 42103331 - 42102996
Alignment:
| Q |
1 |
tcagtgtttttggtcacctatgttgttttcttattttcctcaagcatgccattttttcatatgtcctaatatattgcaaaatttgattttatccttaacg |
100 |
Q |
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| T |
42103331 |
tcagtgtttttggtcacctatgttgttttcttattttcctcaagcatgccattttttcatatgtcctaatatattgcaaaatttgattttatccttaacg |
42103232 |
T |
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| Q |
101 |
nnnnnnntttgttcatctttagtttgnnnnnnnnttgttgactcttgagtacgtagtgtgaaggtaatgatatagggtaaaagacattgattttgcatga |
200 |
Q |
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| T |
42103231 |
aaaaaaatttgttcatctttagtttgaaaaaaaattgttgactcttgagtacgtagtgtgaaggtaatgatatagggtaaaagacattgattttgcatga |
42103132 |
T |
|
| Q |
201 |
tatagaaactaaaacaaatttttgtaagattcaaaatagaaatttgtcagtttcatagacaaatatcatttttaatataacgtgttacgtctttttccac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42103131 |
tatagaaactaaaacaaatttttgtaagattcaaaatagaaatttgtcaatttcatagacaaatatcatttttaatataccgtgttacgtctttttccac |
42103032 |
T |
|
| Q |
301 |
catgtttcaacttttctaagactgctttggcctttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42103031 |
catgtttcaacttttctaagactgctttggcctttg |
42102996 |
T |
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