View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3352_high_25 (Length: 332)
Name: NF3352_high_25
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 9685263 - 9685561
Alignment:
| Q |
16 |
atgccaaatgactggctctaagagtaacatggaatcgcagaaactaccacctcaagaacattggtaattataagataacaaatcaccatccataattcaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9685263 |
atgccaaatgactggctctaagagtaacatggaatcgcagaaactaccacctccagaacattggtaattatcagataacaaatcaccatccataattcaa |
9685362 |
T |
|
| Q |
116 |
gtcaacagtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacataatcatattatacatacaccttattattctataataatcagat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9685363 |
gtcaacagtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacataatcatattatacatacaccttattattctataataatcagat |
9685462 |
T |
|
| Q |
216 |
agaacaatcaaacaaacaatggcatataaatttcctacattgctatgcaaaaatgaatcaaacaacatataaagtaaataaattctcactagcaaatag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9685463 |
agaacaatcaaacaaacaatggcatataaatttcctacattgctatgcaaaaatgaatcaaacaacatataaagtaaataaattctcactagcaaatag |
9685561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 10104304 - 10104231
Alignment:
| Q |
102 |
catccataattcaagtcaaca---gtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacat |
172 |
Q |
| |
|
|||| |||| ||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
10104304 |
catctataaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaatacattagcataaacat |
10104231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 10107784 - 10107712
Alignment:
| Q |
102 |
catccataattcaagtcaaca---gtcaatgaagttatgcaatcatctcaaaactaacacattaacataaaca |
171 |
Q |
| |
|
|||| |||| ||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
10107784 |
catctataaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaatacattagcataaaca |
10107712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University