View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_28 (Length: 301)
Name: NF3352_high_28
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 41456934 - 41457222
Alignment:
| Q |
1 |
actaagggacataattccttccttaattcacttttaagatctattagtcaagttatcaactaattttcaagtttaacnnnnnnnnnnt--gatgattctt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41456934 |
actaagggacataattccttccttaattcacttttaagatctattagtcaagttatcaactaattttcaagtttaacaaaaaaaaaaaaagatgattctt |
41457033 |
T |
|
| Q |
99 |
ttctttgcttaaaatatactataatcacatacatccatcaaataaaaatatgtaaaattttagaaaacgtcgtggatggacacaaccaaacaaggctcca |
198 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41457034 |
ttctttgcttaaaatatacaataatcacatacatccatcaaataaaaatatgtaaaattttagaaaacgtcgtggatggacacaac--aacaaggctcca |
41457131 |
T |
|
| Q |
199 |
cattcatcccacgt-aaaaacagtaacgaatttggcacaatgtacctttttcaaccgtgcacaatattgatcactgtatgtgtcatgttct |
288 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41457132 |
cattcatcccacgtaaaaaacagtaacgaatttggcacaatgtacctttttcaaccgtgcacaatattgatcactgtatgtgtcatgttct |
41457222 |
T |
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