View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_31 (Length: 274)
Name: NF3352_high_31
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 6501094 - 6501334
Alignment:
| Q |
13 |
gagacccataaatttatggattatatttttcaattcaactcaacttatcttgaattaaatcaaaacatattaatacgtgagcaaggggaaatgacaatat |
112 |
Q |
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| T |
6501094 |
gagacccataaacttatggattatatttttcaattcaactcaacttatcttgaattaaatcaaaacatatgaatacgtgagcaaggggaaatgacaatat |
6501193 |
T |
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| Q |
113 |
aattgtactaatggtgcaatcagtaaaacattacaaaatgaaatatttataattctataactttgaaaatcaacaacaatatttatttcattacacaatt |
212 |
Q |
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| T |
6501194 |
aattgtactaatggtccaatcagt-aaacattacaaaatgaaatatttataattct-taactttgaaaatcaacaacaatatttatttcattacacaata |
6501291 |
T |
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| Q |
213 |
cacacttgcatcattatcgtacacaaaacttactattaattaa |
255 |
Q |
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| T |
6501292 |
cacacttgcatcattatcgtacacaaaacttattattaattaa |
6501334 |
T |
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