View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_34 (Length: 264)
Name: NF3352_high_34
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 32378716 - 32378980
Alignment:
| Q |
18 |
ctagcaaacttcaacttcacttccaattccatgaatgcataatgtgtgtgta------------------agtggttgtattataggataattgtgttta |
99 |
Q |
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| T |
32378716 |
ctagcaaacttcaacttcacttccaattccatgaatgcataatgtgtgtgtgtgtgtgtgtgtgtgtgtgagtggttgtattataggataattgtgttta |
32378815 |
T |
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| Q |
100 |
taaataaattctaattccatcctagttgttataagttgtaattacttctgtcccatcgaaaatctctgcctagcaatgcttgaattagttaagtttataa |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32378816 |
taaataaattctaattccatcctagctgttataagttgtaattacttctgtcccatcgaaaatctctgcctagcaatgcttgaattagttaagtttataa |
32378915 |
T |
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| Q |
200 |
ataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaactccttc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32378916 |
ataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaactccttc |
32378980 |
T |
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