View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_40 (Length: 245)
Name: NF3352_high_40
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 3362463 - 3362242
Alignment:
| Q |
12 |
acagaagaacaactctaaatcagaatataatttgtttttacacttacaattgaagagttgcatacataagattttggcataatttaaatttttagggggt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3362463 |
acagaagaacaactctaaatcagaatataatttgtttttacacttacaattgaagagttgcatacataagattttggcataatttaaatttgtagggggt |
3362364 |
T |
|
| Q |
112 |
ttgaggggtggggaaacttcaacaacattaggtatgtcaatcttatagtcaagctctaaattcagatgctcgagcattatacctctaaaaaattgtgatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
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| T |
3362363 |
ttgaggggtggggaaacttcaacaacattaggtatgtcaatcttatagtcaagctctacattcagatgcaagagcattatacctctaaaaaatagtgatg |
3362264 |
T |
|
| Q |
212 |
aatctctaggctttgtatgtga |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
3362263 |
aatctctaggctttgtatgtga |
3362242 |
T |
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