View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_41 (Length: 244)
Name: NF3352_high_41
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 19297251 - 19297469
Alignment:
| Q |
1 |
ccaaacaattgataaagaacataatcatacaatataaagtatgaaattaactacttaaaactaatgtaaactactaaaccagttggctagatagaaattt |
100 |
Q |
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| T |
19297251 |
ccaaacaattgataaagaacataatcatacaacataaagtatgaaattaactacttaaaacttatgtaaactactaaaccagttggctagatagaaattt |
19297350 |
T |
|
| Q |
101 |
actagtttccagaatcaacattcaacaatacacttacaaattacaacaagacactcagcagccccgacacttctgatcaaaggtgtgtccagtgtatgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19297351 |
actagtttccagaatcaacattcaacaatacacttacaaattacaacaagacactcagcagccccgacacttctgatcaaaggtgtgtcgagtgtatgac |
19297450 |
T |
|
| Q |
201 |
atgtgttcgtgtctcacac |
219 |
Q |
| |
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|||||||||||||| |||| |
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| T |
19297451 |
atgtgttcgtgtctgacac |
19297469 |
T |
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