View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_45 (Length: 227)
Name: NF3352_high_45
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 44614326 - 44614106
Alignment:
| Q |
6 |
agtgatacctttgatctcttaacagaaaagtccatggaattgttgctaccaaataacctcttaactggcagtgtagtagtagccatcttcttcacagaag |
105 |
Q |
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| T |
44614326 |
agtgatacctttgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactggcagtgtagtagtagccatcttcttcacagaag |
44614227 |
T |
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| Q |
106 |
catcaaaatccatctttcaactgtagaatctgaacaaccaaaataacaagcttcctttaaaaaatttctcggtcaaactcaatcaacaagtaatacgtta |
205 |
Q |
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| T |
44614226 |
catcaaaatccatctttcaactgtagaatctgaacgagaaaaataacaagcttcgttt-aaaaatttctcggtcaaactcaatcaacaagtaatacgtta |
44614128 |
T |
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| Q |
206 |
cacttcagatgcagaattagaa |
227 |
Q |
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| T |
44614127 |
cacttcagatgcagaattagaa |
44614106 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 44951541 - 44951637
Alignment:
| Q |
14 |
ctttgatctcttaacagaaaagtccatggaattgttgctaccaaataacctcttaactggcagtgtagtagtagccatcttcttcacagaagcatca |
110 |
Q |
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| T |
44951541 |
ctttgatttcttaacagaaatgatcaaggaattgctgttatcaaatagcctcttaactggaagcatagtattatccatcttctcaacagaagcatca |
44951637 |
T |
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