View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3352_high_48 (Length: 214)
Name: NF3352_high_48
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_48 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32785234 - 32785021
Alignment:
| Q |
1 |
cccattatatctaaggttatatttttcatctttcttgaaattggagacagggataaccaactccatcaaagttgggaatggggtaggcaaaacttatacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32785234 |
cccattatatctaaggttatatttttcatctttcttgaaattggagacagggataaccaactccatcaaagttgggaatggggtaggcaaaacttatacc |
32785135 |
T |
|
| Q |
101 |
cgcccccttgccatgtccatgtggactatttccggaattgagaggaatgccgtggaagtttatttatttatttttgcatggcctaagccccaagaaacag |
200 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32785134 |
cgccccgttgccatgtctatatggactatttccggaattgagaggaatgccgtggaagtttatttatttatttttgcatggcctaagccccaagaaacag |
32785035 |
T |
|
| Q |
201 |
aaaagcacatcaaa |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32785034 |
aaaagcacatcaaa |
32785021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University