View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_high_50 (Length: 206)

Name: NF3352_high_50
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_high_50
NF3352_high_50
[»] chr4 (2 HSPs)
chr4 (1-201)||(39482125-39482325)
chr4 (1-107)||(51862260-51862364)
[»] chr3 (4 HSPs)
chr3 (1-200)||(21974413-21974611)
chr3 (1-200)||(21996844-21997042)
chr3 (1-200)||(22157522-22157720)
chr3 (66-180)||(6078090-6078206)
[»] chr7 (1 HSPs)
chr7 (1-201)||(9332584-9332780)
[»] chr5 (1 HSPs)
chr5 (50-168)||(27030240-27030356)
[»] scaffold0755 (1 HSPs)
scaffold0755 (50-168)||(5621-5737)
[»] chr8 (1 HSPs)
chr8 (50-168)||(22647698-22647814)
[»] chr6 (2 HSPs)
chr6 (66-180)||(13550026-13550142)
chr6 (66-180)||(19381020-19381135)
[»] scaffold0039 (1 HSPs)
scaffold0039 (66-180)||(81729-81844)
[»] chr2 (1 HSPs)
chr2 (66-130)||(24863421-24863485)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 39482325 - 39482125
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482325 atggatgatttagttggtcattttattggtcattttttttgttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 39482226  T
Q  101 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482225 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 39482126  T
Q  201 c 201  Q
    |    
T  39482125 c 39482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 51862260 - 51862364
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    |||||||||||||||||| |||||||||||||         ||||||  |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  51862260 atggatgatttagttggtgattttattggtcatttttta--ttttaattatattcttcattgatcttttcttcaatttttcctaacattgatttattgta 51862357  T
Q  101 ttcattt 107  Q
    |||||||    
T  51862358 ttcattt 51862364  T

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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21974611 - 21974413
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    ||||||||||||||||||||||||||||||||        |||||||  |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  21974611 atggatgatttagttggtcattttattggtcattttttt-gttttaattatattcttcattgatcttttctttaattttcccttacattgatttattgta 21974513  T
Q  101 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21974512 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 21974413  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 21997042 - 21996844
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    ||||||||||||||||||||||||||||||||        |||||||  |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  21997042 atggatgatttagttggtcattttattggtcattttttt-gttttaattatattcttcattgatcttttctttaattttcccttacattgatttattgta 21996944  T
Q  101 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21996943 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 21996844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22157720 - 22157522
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    ||||||||||||||||||||||||||||||||        |||||||  |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  22157720 atggatgatttagttggtcattttattggtcattttttt-gttttaattatattcttcattgatcttttctttaattttcccttacattgatttattgta 22157622  T
Q  101 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22157621 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 22157522  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 6078090 - 6078206
Alignment:
Q  66 ttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttc--atgcaaatccatttatattataatcccttttttagtgtg 163  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||| | |||||||||  |||||| |||| ||||||| |||||||||||||||||||    
T  6078090 ttttcttcaaacttcccttacaatgatttattgtattcatttgttttcctttagttttcatatgcaattccaattatattttaatcccttttttagtgtg 6078189  T
Q  164 gaaaatttatttaactt 180  Q
    ||||||| || ||||||    
T  6078190 gaaaattgatgtaactt 6078206  T

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Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 9332780 - 9332584
Alignment:
Q  1 atggatgatttagttggtcattttattggtcannnnnnnngttttaaaaatattctttattgatcttttcttcaattttcccttacattgatttattgta 100  Q
    |||||||||||||||||| |||||||||||||         ||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  9332780 atggatgatttagttggtgattttattggtcattttt----ttttaattatattcttcattgaccttttcttcaattttcccttacattgatttattgta 9332685  T
Q  101 ttcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttacactccctccattt 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9332684 ttgatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtggaaaatttatttaacttaccttatactccctccattt 9332585  T

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Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 27030240 - 27030356
Alignment:
Q  50 atattctttattgatcttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttcatgcaaatccatttatattataatc 149  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||| ||| |||||||| |||||    
T  27030240 atatccttcattgattttttcttcaattttcccttgcattgatttatt--attcatttgtttttccttaattttcatgcaattccctttatattttaatc 27030337  T
Q  150 ccttttttagtgtggaaaa 168  Q
    ||||||| |||||| ||||    
T  27030338 cctttttaagtgtgaaaaa 27030356  T

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Target: scaffold0755 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 5621 - 5737
Alignment:
Q  50 atattctttattgatcttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttcatgcaaatccatttatattataatc 149  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||| | ||||||||| | | |||||||| |||||    
T  5621 atatccttcattgattttttcttcaattttcccttgcattgatttatt--attcatttgtttttccttaatattcatgcaatttcctttatattttaatc 5718  T
Q  150 ccttttttagtgtggaaaa 168  Q
    ||||||| |||||| ||||    
T  5719 cctttttaagtgtgaaaaa 5737  T

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Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 22647814 - 22647698
Alignment:
Q  50 atattctttattgatcttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttcatgcaaatccatttatattataatc 149  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||| | ||||||||| | | |||||||| |||||    
T  22647814 atatccttcattgattttttcttcaattttcccttgcattgatttatt--attcatttgtttttccttaatattcatgcaattacctttatattttaatc 22647717  T
Q  150 ccttttttagtgtggaaaa 168  Q
    ||||||| |||||| ||||    
T  22647716 cctttttaagtgtgaaaaa 22647698  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 13550142 - 13550026
Alignment:
Q  66 ttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttc--atgcaaatccatttatattataatcccttttttagtgtg 163  Q
    ||||||||||  |||||||||| |||||||||||||| ||||||||||  |||||||||  |||||| |||  ||||||| |||||||| ||||||||||    
T  13550142 ttttcttcaaacttcccttacaatgatttattgtattaatttgtttttatttagttttcatatgcaattcccattatattttaatccctcttttagtgtg 13550043  T
Q  164 gaaaatttatttaactt 180  Q
    ||||||| || ||||||    
T  13550042 gaaaattgatgtaactt 13550026  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 19381020 - 19381135
Alignment:
Q  66 ttttcttcaattttcccttacattgattta-ttgtattcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtgg 164  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||||| ||||| ||||||||| | || ||||||| || | | |||||||||||||    
T  19381020 ttttcttcaaatttcctttaccttgatttaattgtattcatttgtttttctttagtattcatgcaattacaattatattttactactttttttagtgtgg 19381119  T
Q  165 aaaatttatttaactt 180  Q
    |||||| || ||||||    
T  19381120 aaaattgatgtaactt 19381135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 81729 - 81844
Alignment:
Q  66 ttttcttcaattttcccttacattgattta-ttgtattcatttgtttttccttagttttcatgcaaatccatttatattataatcccttttttagtgtgg 164  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||||| ||||| ||||||||| | || ||||||| || | | |||||||||||||    
T  81729 ttttcttcaaatttcctttaccttgatttaattgtattcatttgtttttctttagtattcatgcaattacaattatattttactactttttttagtgtgg 81828  T
Q  165 aaaatttatttaactt 180  Q
    |||||| || ||||||    
T  81829 aaaattgatgtaactt 81844  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 24863485 - 24863421
Alignment:
Q  66 ttttcttcaattttcccttacattgatttattgtattcatttgtttttccttagttttcatgcaa 130  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  24863485 ttttcttcaaatttcccttgcattgatttattgtattcatttgtttttctttagttttcacgcaa 24863421  T

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