View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_7 (Length: 513)
Name: NF3352_high_7
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 6971759 - 6971272
Alignment:
| Q |
18 |
attccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgttgctgcaatgatttcccagatactgtactatacttt |
117 |
Q |
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| T |
6971759 |
attccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgttgttgcaatgatttcccagatactgtactatacttt |
6971660 |
T |
|
| Q |
118 |
gaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaatatatgaatctctttcctgcaaaatcccattaataat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971659 |
gaaagaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaatatatgaatctctttcctgcaaaatcccattaataat |
6971560 |
T |
|
| Q |
218 |
aatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggccatatttataagcactaatataaaaaacatcattctaata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6971559 |
aatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggccatatttataagcactaatataaaaaatatcattctaata |
6971460 |
T |
|
| Q |
318 |
taaagtttaggtgagttggattttcagggctcgtcaaaattagagctgacctcaagatttaaagactgtttatagagatttttactgatcacccaccaaa |
417 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
6971459 |
taaagtttaggtgagttggattttcaggactcatcaaaatcagagctgacctcaagatttaaagactgtttatagaggtttttactaatcacccaccaaa |
6971360 |
T |
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| Q |
418 |
tattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactctctctacaagtctcccttgattcatctc |
505 |
Q |
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| T |
6971359 |
tattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactctctctacaagtctcccttgattcttctc |
6971272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 1266648 - 1266471
Alignment:
| Q |
21 |
ccaatcttcaccatttgccattaacaagccttttccaataaaatgcttggaaccttgttgttgctgcaatgatttcccagatactgtactatactttgaa |
120 |
Q |
| |
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||||| ||||||||||||||| || | |||| |||||| ||||| || ||||| |||| ||| | |||||||||||||||||||||| || |||||| |
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| T |
1266648 |
ccaattttcaccatttgccatcaatactccttctccaatgaaatgttttgaaccctgtttttgtaaccatgatttcccagatactgtactgtattttgaa |
1266549 |
T |
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| Q |
121 |
agaaactccttgatcaatgcagcctctgtgaggcacatccttggctctattccattccaatatatgaatctctttcct |
198 |
Q |
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|||||||| || |||||| ||| ||||| | |||| |||||||||| |||||||||||||| | ||||||||| |
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| T |
1266548 |
agaaactcttttatcaattcagtttctgtcaaacacaaccttggctctggaccattccaatatatatacctctttcct |
1266471 |
T |
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