View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_high_9 (Length: 502)
Name: NF3352_high_9
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 32785990 - 32785644
Alignment:
| Q |
12 |
agcagagagaattaagagtagtagaaacctcatagattcagtgatctgaaatacgatgtaaactaagcaactcgagtaactagttacgggttgtaactaa |
111 |
Q |
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| T |
32785990 |
agcagagagaattaagagtagtagaaacctcatagattcagtgatttgaaatgtgatgtaaactaagcagctcgagtaactagttacgggttgtaactaa |
32785891 |
T |
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| Q |
112 |
cttctaaccaactaaactcagttcaaacaacattttatcaagttgttaagcttgctaagtgacttcctcnnnnnnnnnnnnnnnnnnnngctttttaagt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32785890 |
cttctaaccaactaaactcagttcaaacaacattttatcaagttgttaagcttgctaagtgacttcctcaaaaataaaaataaaataaagctttttaagt |
32785791 |
T |
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| Q |
212 |
gacatgttgcagctggtggagattgcggtgagtgaggccgcttaggttggtctggtggtgttggcttgagattttttgagtgttcctccttaaagttcaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32785790 |
gacatgttgcagctggtggagattgcggtgagtgaggccgcttaggttggtctggtggtgttggcttgagattttttgagtgttcctccttaaagttcaa |
32785691 |
T |
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| Q |
312 |
actcgattctcccttgtgttaatttatgtggactaatttagcttctt |
358 |
Q |
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| T |
32785690 |
actcgattctcccttgtgttaatttatgtggattaatttagcttctt |
32785644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 32785602 - 32785500
Alignment:
| Q |
399 |
ccacctagttgtaagtgtaactacttgttggtgtgtgaggtgttttaaagagtaatttttccttatctcaaaagatgggagtggggtaatggagacgttg |
498 |
Q |
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| T |
32785602 |
ccacctagttgtaagtgtaactacttgttggtgtgtgaggtgttttaaagagtactttttccttatctcaaaagatgggagtggggtaatggagacgttg |
32785503 |
T |
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| Q |
499 |
ata |
501 |
Q |
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||| |
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| T |
32785502 |
ata |
32785500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 22035468 - 22035512
Alignment:
| Q |
314 |
tcgattctcccttgtgttaatttatgtggactaatttagcttctt |
358 |
Q |
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| T |
22035468 |
tcgattctctcctgtgtcaatttaagtggactaatttagcttctt |
22035512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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