View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_1 (Length: 753)
Name: NF3352_low_1
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 13 - 728
Target Start/End: Original strand, 6916470 - 6917183
Alignment:
| Q |
13 |
aatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtac |
112 |
Q |
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| T |
6916470 |
aatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtac |
6916569 |
T |
|
| Q |
113 |
agacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
6916570 |
agacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaa |
6916669 |
T |
|
| Q |
213 |
aaagaattgtagttttggttcannnnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactcc |
312 |
Q |
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| T |
6916670 |
aaagaattgtggttttggttcatttttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactcc |
6916769 |
T |
|
| Q |
313 |
aatgtttttattgggaaacttgatttaatattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatc |
412 |
Q |
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| T |
6916770 |
aatgtttttattgggaaacttgatttaacattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatc |
6916869 |
T |
|
| Q |
413 |
atacattgttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttcttgtatatt |
512 |
Q |
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| T |
6916870 |
atacattgttcagctagtttagatttttgttcacttatcaatgcacttctgactgtaaat--gtgatgaggtgataatcatggcaggcttcttgtatatt |
6916967 |
T |
|
| Q |
513 |
gttccggtctggccaaaagggcggccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggttta |
612 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6916968 |
gttccggtctggccaaaagggcgaccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggtcta |
6917067 |
T |
|
| Q |
613 |
gaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggc |
712 |
Q |
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| T |
6917068 |
gaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggc |
6917167 |
T |
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| Q |
713 |
gacagtgaagtctccg |
728 |
Q |
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| T |
6917168 |
gacagtgaagtctccg |
6917183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 509
Target Start/End: Original strand, 6890644 - 6890724
Alignment:
| Q |
421 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttcttgtat |
509 |
Q |
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| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgta--------atgaggtgatattcatggcaggcttcttgtat |
6890724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
52 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
151 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
152 |
ctgaatgat |
160 |
Q |
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||||||||| |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 15036180 - 15036138
Alignment:
| Q |
13 |
aatatgtttgggtattctacggctattcgttcgatgacacagg |
55 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036180 |
aatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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