View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_10 (Length: 468)

Name: NF3352_low_10
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_10
NF3352_low_10
[»] chr3 (8 HSPs)
chr3 (107-458)||(26652228-26652579)
chr3 (18-111)||(26651490-26651582)
chr3 (107-197)||(19854010-19854098)
chr3 (163-197)||(24839494-24839528)
chr3 (107-197)||(20015721-20015806)
chr3 (107-197)||(26647514-26647602)
chr3 (163-197)||(19944281-19944315)
chr3 (163-197)||(20046684-20046718)
[»] chr4 (1 HSPs)
chr4 (344-387)||(29980077-29980120)
[»] chr8 (2 HSPs)
chr8 (163-197)||(22689193-22689227)
chr8 (345-387)||(43539350-43539392)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 107 - 458
Target Start/End: Original strand, 26652228 - 26652579
Alignment:
Q  107 ccatttaagaaagatttgatggatatacaaatgctctcttttttcttaaatgctaaagagtttctgagctagttggatttgagtctatagatacacaatg 206  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26652228 ccatttaagaaagatttggtggatatacaaatgctctcatttgt--taaatgctaaagagtttctgagctagttggatttgagtctatagatacacaatg 26652325  T
Q  207 acatatgatta-tttatacatgttaacagaaacaaaaaagccaagaatgggtagaaagatggtctctgcagtggttttactgttgtgctttagtgattcg 305  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26652326 acatatgattaatttatacatgttaacagaaacaaaaaagccaagaatgggtagaaagatggtctctgcagtggttttactgttgtgctttagtgattcg 26652425  T
Q  306 gttgtcttggcaa-ttagttatgtgctgcgacttgtttttgatgattaacttatatggtttttcatctttaaacccaaaagaacaacgaagatagataga 404  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26652426 gttgtcttggcaaattggttatgtgctgcgacttgtttttgatgattaacttacatggtttttcatctttaaacccaaaagaacaacgaagatagataga 26652525  T
Q  405 tttagagatgaagatgatgaatattatatttttacttttaatttagtccctatg 458  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  26652526 tttagagatgaagatgatgaatattatttttttactttcaatttagtccgtatg 26652579  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 26651490 - 26651582
Alignment:
Q  18 ggaaatgaaggaaagtttcatgctttcaccagctgcccataccgaaccaactttcagaaatgtgcattttcttaaaccgattgcaaactccatt 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26651490 ggaaatgaaggaaagtttcatgctttcacca-ctgcccataccgaaccaactttcagaaatgtgcattttcttaaaccgattgcaaactccatt 26651582  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 19854010 - 19854098
Alignment:
Q  107 ccatttaagaaagatttgatggatatacaaatgctctcttttttcttaaatgctaaagagtttctgagctagttggatttgagtctataga 197  Q
    ||||||||||| |||||| |||||| |||||||||||  ||| ||  | |||||  |||||||||||||||||||| ||||||| ||||||    
T  19854010 ccatttaagaacgatttggtggataaacaaatgctcttatttgtc--acatgcttgagagtttctgagctagttgggtttgagtttataga 19854098  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 24839528 - 24839494
Alignment:
Q  163 agagtttctgagctagttggatttgagtctataga 197  Q
    |||||||||||||||||||||||||||||||||||    
T  24839528 agagtttctgagctagttggatttgagtctataga 24839494  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 20015806 - 20015721
Alignment:
Q  107 ccatttaagaaagatttgatggatatacaaatgctctcttttttcttaaatgctaaagagtttctgagctagttggatttgagtctataga 197  Q
    ||||||||||||||||||   |||| |||||||||||| ||| |  || ||||| ||||||||| ||||| ||||||||||| ||||||||    
T  20015806 ccatttaagaaagatttg---gataaacaaatgctctcatttgt--tatatgcttaagagtttccgagcttgttggatttgactctataga 20015721  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 26647514 - 26647602
Alignment:
Q  107 ccatttaagaaagatttgatggatatacaaatgctctcttttttcttaaatgctaaagagtttctgagctagttggatttgagtctataga 197  Q
    |||||||||||||||||| | |||  |||||||||||| ||| |  || |||||  |||||||||||||| |||||||| || ||||||||    
T  26647514 ccatttaagaaagatttggttgatgaacaaatgctctcatttgt--tatatgcttgagagtttctgagcttgttggattcgactctataga 26647602  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 19944281 - 19944315
Alignment:
Q  163 agagtttctgagctagttggatttgagtctataga 197  Q
    |||||||| ||||||||||||||||||||||||||    
T  19944281 agagtttccgagctagttggatttgagtctataga 19944315  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 20046684 - 20046718
Alignment:
Q  163 agagtttctgagctagttggatttgagtctataga 197  Q
    |||||||||||||| ||||||||||||||||||||    
T  20046684 agagtttctgagcttgttggatttgagtctataga 20046718  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 29980077 - 29980120
Alignment:
Q  344 tgatgattaacttatatggtttttcatctttaaacccaaaagaa 387  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  29980077 tgatgattaacttatctagtttttcatctttaaacccaaaagaa 29980120  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 22689227 - 22689193
Alignment:
Q  163 agagtttctgagctagttggatttgagtctataga 197  Q
    |||||||||||||||||||||||||||||||||||    
T  22689227 agagtttctgagctagttggatttgagtctataga 22689193  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 43539392 - 43539350
Alignment:
Q  345 gatgattaacttatatggtttttcatctttaaacccaaaagaa 387  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  43539392 gatgattaacttatctagtttttcatctttaaacccaaaagaa 43539350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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