View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_15 (Length: 442)
Name: NF3352_low_15
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 3 - 424
Target Start/End: Original strand, 1792370 - 1792792
Alignment:
| Q |
3 |
gatgtcgaagaatattgaaaagcacttccccaaattgacctgaaataaaacacnnnnnnnggttgcataatttatgcaaaaactcacaattcccataagg |
102 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1792370 |
gatgttgaagaatattgaaaagcacttccctaaattgacctgaaataaaacacaaaaaaaggttgcataatttatgcaaaaactcacaattcccataagg |
1792469 |
T |
|
| Q |
103 |
catgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacacnnnnnnn-gtc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1792470 |
catgaaactttgcaaaaaaggcatggaagcttatacaaatttgcataacacttaagtacgaaaatgataaagatatcattgaatcacacttttttttgtc |
1792569 |
T |
|
| Q |
202 |
ttttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggctcaaagaatgtgcaaaacac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1792570 |
ttttattcttgggactttcttaatcgttgtcaaatttagaggaaaacatgggtaaacgtggcaatgacaaaacccttggttcaaagaatgtgcaaaacac |
1792669 |
T |
|
| Q |
302 |
aaataactccttgtgcttcacccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792670 |
aaataactccttgtgcttcacccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatg |
1792769 |
T |
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| Q |
402 |
agacattctttctttgctattta |
424 |
Q |
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||||||||||||||||||||||| |
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| T |
1792770 |
agacattctttctttgctattta |
1792792 |
T |
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