View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_16 (Length: 441)

Name: NF3352_low_16
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_16
NF3352_low_16
[»] chr4 (2 HSPs)
chr4 (16-441)||(19296836-19297260)
chr4 (117-177)||(20727130-20727190)
[»] chr8 (4 HSPs)
chr8 (140-263)||(16530170-16530292)
chr8 (182-230)||(33004647-33004695)
chr8 (200-246)||(31897065-31897111)
chr8 (178-263)||(31244348-31244433)
[»] chr1 (5 HSPs)
chr1 (178-279)||(40894743-40894843)
chr1 (182-255)||(31285313-31285386)
chr1 (183-242)||(3750633-3750692)
chr1 (182-215)||(472887-472920)
chr1 (184-222)||(25246627-25246665)
[»] chr7 (3 HSPs)
chr7 (187-279)||(5660701-5660794)
chr7 (192-262)||(40242870-40242940)
chr7 (183-262)||(40101792-40101872)
[»] chr3 (4 HSPs)
chr3 (184-261)||(25651290-25651368)
chr3 (181-222)||(33271862-33271903)
chr3 (178-241)||(46246933-46246996)
chr3 (184-241)||(10515513-10515571)
[»] chr6 (2 HSPs)
chr6 (180-234)||(10831837-10831891)
chr6 (165-225)||(32754993-32755052)
[»] chr5 (2 HSPs)
chr5 (185-242)||(27388854-27388911)
chr5 (192-263)||(43112735-43112805)
[»] chr2 (4 HSPs)
chr2 (184-262)||(11299983-11300061)
chr2 (209-262)||(44953265-44953318)
chr2 (206-263)||(33742899-33742956)
chr2 (205-257)||(43764722-43764774)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 19296836 - 19297260
Alignment:
Q  16 atcaaacagggtaccaaatccctgtcaaaagtaaatcacatgttaaatttaccgatataaaatgtctcatggacacccaattttccctacacccgagaca 115  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19296836 atcaaacggggtaccaaatccctgccaaaggtaaatcacatgttaaatttaccgatataaaatgtctcatggacacccaattttccctacacccgagaca 19296935  T
Q  116 tctggttaactacatgcacaattgtagttaatttagttgagtatatggataatttagatcacattgtgaaattgtggttaatcatgtagttgaattaacc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19296936 tctggttaactacatgcacaattgtagttaatttagttgagtatatggataatttagatcac-ttgtgaaattgtggttaatcatgtagttgaattaacc 19297034  T
Q  216 agaattttgaccgtgaattaaattaaccatctactcaactaaattaaccacaattattaacgtgtcccaagtgtgtaagaaaaaatggatgtctaaatat 315  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19297035 agaattttgaccgtgaattgaattaaccatctattcaactaaattaaccacaattattaacgtgtcccaagtgtgtaagaaaaaatggatgtctaaatat 19297134  T
Q  316 tatttatctttaccaaatgcagcatcgcatcatatgattaggtagtaacagcaacaacatctagataatgtacataatggtacacaaataaaacaattca 415  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19297135 tatttatctttaccaaatgcaccatcgcatcatatgattaggtagtaacagcaacaacatctagataatgtacataatgctacacaaataaaacaattca 19297234  T
Q  416 tagtccatatgaatctccaaacaatt 441  Q
    ||||||||||||||||||||||||||    
T  19297235 tagtccatatgaatctccaaacaatt 19297260  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 20727130 - 20727190
Alignment:
Q  117 ctggttaactacatgcacaattgtagttaatttagttgagtatatggataatttagatcac 177  Q
    ||||||||  ||||||| |||||| ||||||| | |||||||||||| |||||||||||||    
T  20727130 ctggttaatcacatgcaaaattgtggttaattcacttgagtatatggttaatttagatcac 20727190  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 16530170 - 16530292
Alignment:
Q  140 tagttaatttagttgagtatatggataatttagatcacattgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaatt 239  Q
    ||||||||| || | ||||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||||||| ||||||| |  |    
T  16530170 tagttaattcagcttagtatatggttaatttagatcacattgagaa-ttgtggttaatcatgtacttgaatcaaccacaattttgactgtgaattgatat 16530268  T
Q  240 aaccatctactcaactaaattaac 263  Q
    || |||| |||||||| |||||||    
T  16530269 aatcatccactcaactgaattaac 16530292  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 33004647 - 33004695
Alignment:
Q  182 tgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtg 230  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  33004647 tgaaattgtggttaattatgtcgttgaattaaccacaattttgaccgtg 33004695  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 31897065 - 31897111
Alignment:
Q  200 tgtagttgaattaaccagaattttgaccgtgaattaaattaaccatc 246  Q
    ||||||||||||||||| ||||||||  ||||||||||| |||||||    
T  31897065 tgtagttgaattaaccataattttgattgtgaattaaatcaaccatc 31897111  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 31244348 - 31244433
Alignment:
Q  178 attgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaac 263  Q
    ||||||||| |||||||||||||||  ||  |||||||| ||||||||| ||||||| |  |   |||||||||||| ||||||||    
T  31244348 attgtgaaaatgtggttaatcatgtcattagattaaccataattttgactgtgaattgacctcctcatctactcaacaaaattaac 31244433  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 40894743 - 40894843
Alignment:
Q  178 attgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaaccacaattattaacg 277  Q
    ||||||| |||| ||||||  |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || |||||||| || ||||||    
T  40894743 attgtgagattgcggttaactatgtagttgaattaaccataattt-gactgtgaattaaattaaccatctactcaactgaaataaccacattttttaacg 40894841  T
Q  278 tg 279  Q
    ||    
T  40894842 tg 40894843  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 31285313 - 31285386
Alignment:
Q  182 tgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaact 255  Q
    |||||||||||||||| |||||||||||||||||| |||| |||| ||||||| | | || |||||||| ||||    
T  31285313 tgaaattgtggttaattatgtagttgaattaaccataattatgactgtgaattgattcaatcatctacttaact 31285386  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 3750633 - 3750692
Alignment:
Q  183 gaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaac 242  Q
    ||||||||||||||| ||||| |||||||||||| || ||||||| |||||| |||||||    
T  3750633 gaaattgtggttaataatgtaattgaattaaccacaactttgaccttgaattgaattaac 3750692  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 472887 - 472920
Alignment:
Q  182 tgaaattgtggttaatcatgtagttgaattaacc 215  Q
    ||||||||||||||||||||||||||||||||||    
T  472887 tgaaattgtggttaatcatgtagttgaattaacc 472920  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 25246665 - 25246627
Alignment:
Q  184 aaattgtggttaatcatgtagttgaattaaccagaattt 222  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  25246665 aaattgtggttaagcatgtagttgaattaaccacaattt 25246627  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 5660794 - 5660701
Alignment:
Q  187 ttgtggttaat-catgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaaccacaattattaacgtg 279  Q
    ||||||||||| ||| ||||||||||||||||||||||  ||||||||| || |||| ||||| | |||||||||||||||| || ||||||||    
T  5660794 ttgtggttaattcatatagttgaattaaccagaattttagccgtgaattgaaataacaatctagttaactaaattaaccacactttttaacgtg 5660701  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 40242940 - 40242870
Alignment:
Q  192 gttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaa 262  Q
    |||| |||||||||||||||||||| ||||||||  ||||||| |||||||||| |||| |||||||||||    
T  40242940 gttattcatgtagttgaattaaccacaattttgattgtgaattgaattaaccatttactaaactaaattaa 40242870  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 40101872 - 40101792
Alignment:
Q  183 gaaattgtggttaat-catgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaa 262  Q
    ||||||||||||| | || |||||| ||| ||||| |||||| |  ||||||| |||||||||||||||||||| ||||||    
T  40101872 gaaattgtggttagttcaagtagtttaatgaaccataatttttaaggtgaattgaattaaccatctactcaactgaattaa 40101792  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 25651368 - 25651290
Alignment:
Q  184 aaattgtggttaat-catgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaatta 261  Q
    ||||||| |||||| |||| |||| ||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||    
T  25651368 aaattgtcgttaattcatgcagttaaattaaccagaattttgactgtgaattgaattaaccatctactaaactgaatta 25651290  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 33271862 - 33271903
Alignment:
Q  181 gtgaaattgtggttaatcatgtagttgaattaaccagaattt 222  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  33271862 gtgaaattgtggttaatcatgtagttgaatttaccacaattt 33271903  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 46246996 - 46246933
Alignment:
Q  178 attgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaa 241  Q
    |||||| |||| |||||| | | |||||||||||||||| |||||| || ||||||||||||||    
T  46246996 attgtgcaattatggttagttaggtagttgaattaaccacaattttaactgtgaattaaattaa 46246933  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 10515571 - 10515513
Alignment:
Q  184 aaattgtggttaatc-atgtagttgaattaaccagaattttgaccgtgaattaaattaa 241  Q
    ||||||||||||||  |||||||||||||||| | |||||||| |||||||| ||||||    
T  10515571 aaattgtggttaatttatgtagttgaattaacgataattttgatcgtgaattgaattaa 10515513  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 10831891 - 10831837
Alignment:
Q  180 tgtgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaatt 234  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||    
T  10831891 tgtgaaattttggttaatcatgtagttgaattaaccataattttgagcatgaatt 10831837  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 32754993 - 32755052
Alignment:
Q  165 taatttagatcacattgtgaaattgtggttaatcatgtagttgaattaaccagaattttga 225  Q
    ||||||| |||||||||  ||||||||||||||||||||  ||||||||||| ||||||||    
T  32754993 taatttaaatcacattga-aaattgtggttaatcatgtaagtgaattaaccaaaattttga 32755052  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 27388911 - 27388854
Alignment:
Q  185 aattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaac 242  Q
    ||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||||    
T  27388911 aattgtggttaatcatgtagttggattaaccacaattttgatcgtgaactgaattaac 27388854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 43112735 - 43112805
Alignment:
Q  192 gttaatcatgtagttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaac 263  Q
    ||||||||| ||||| ||||| | | |||||| ||| |||||||||||||| |||||||||||| |||||||    
T  43112735 gttaatcatatagtt-aattagctataattttaaccatgaattaaattaactatctactcaactgaattaac 43112805  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 11299983 - 11300061
Alignment:
Q  184 aaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattaaatt-aaccatctactcaactaaattaa 262  Q
    |||||||||||||| ||||| ||||||||| || ||||||||||||||||| |||| || ||||||  ||||||||||||    
T  11299983 aaattgtggttaat-atgtaattgaattaatcacaattttgaccgtgaatttaattaaaacatctatccaactaaattaa 11300061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 44953318 - 44953265
Alignment:
Q  209 attaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaa 262  Q
    |||||||| |||||||||||| |||||||||||| || || |||||||||||||    
T  44953318 attaaccataattttgaccgtaaattaaattaacaatttattcaactaaattaa 44953265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 33742899 - 33742956
Alignment:
Q  206 tgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaaattaac 263  Q
    ||||||||||| |||||| ||||| |||| |||||||||| || | ||||||||||||    
T  33742899 tgaattaaccataattttaaccgtaaattgaattaaccatttagtaaactaaattaac 33742956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 43764722 - 43764774
Alignment:
Q  205 ttgaattaaccagaattttgaccgtgaattaaattaaccatctactcaactaa 257  Q
    |||||||||||| | |||||||||||||||||| |||| || || ||||||||    
T  43764722 ttgaattaaccacagttttgaccgtgaattaaactaacaatttaatcaactaa 43764774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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