View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_17 (Length: 416)
Name: NF3352_low_17
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 45 - 407
Target Start/End: Complemental strand, 191512 - 191150
Alignment:
| Q |
45 |
tgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaa |
144 |
Q |
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| T |
191512 |
tgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaa |
191413 |
T |
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| Q |
145 |
tattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagct |
244 |
Q |
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| T |
191412 |
tattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagct |
191313 |
T |
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| Q |
245 |
ctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttggggggttattggtaataatgtatgctcct |
344 |
Q |
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| T |
191312 |
ctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttgggaggttattggtaataatgtatgctcct |
191213 |
T |
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| Q |
345 |
ttgttagtagcactttcaaaagggggatcgttgatccttattatgttgcaactctgatgatgt |
407 |
Q |
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| T |
191212 |
ttgttagtagcactttcaaaagggggatcgttgatccttattatgttgcaactcttatgatgt |
191150 |
T |
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