View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_18 (Length: 407)

Name: NF3352_low_18
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_18
NF3352_low_18
[»] chr8 (4 HSPs)
chr8 (15-391)||(15580591-15580967)
chr8 (52-354)||(8333604-8333904)
chr8 (62-234)||(42312296-42312465)
chr8 (15-95)||(12049457-12049537)
[»] chr1 (2 HSPs)
chr1 (111-234)||(41326126-41326249)
chr1 (62-234)||(47246947-47247117)
[»] scaffold0003 (2 HSPs)
scaffold0003 (59-240)||(34868-35048)
scaffold0003 (59-240)||(41538-41718)
[»] chr6 (3 HSPs)
chr6 (111-237)||(20909228-20909354)
chr6 (111-237)||(20923676-20923802)
chr6 (59-240)||(27445640-27445820)
[»] chr5 (1 HSPs)
chr5 (307-348)||(11909635-11909676)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 15580591 - 15580967
Alignment:
Q  15 gagacacatacatatacatgcagcaagacacatacatattcatttgcagtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgctttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15580591 gagacacatacatatacatgcagcaagacacatacatattcatttgcagtagttcaatccagatcagaaaaagtcaccttttgtagcctttgttgctttt 15580690  T
Q  115 cctgctttaatgaaagaacagccccagttaatctagcaagagtctcattactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggtggat 214  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15580691 cctgctttaatgaaagaacaaccccagttaatctagcaagagtgtcattactaatgcattgtggtgcaccatttgatgaaccgctcaggcttgggtggat 15580790  T
Q  215 gtcatttaaagtcttccaaatatcaattgacattacagctgaaatctcactgatagtactgatgtgacttttcactttctgctggcgtaagatctgagag 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15580791 gtcgtttaaagtcttccaaatatcaattgacattacagctgaaatctcactgatagtactgatgtgacttttcactttctgctggcgtaagatctgagag 15580890  T
Q  315 aaaaaaggaagcaatattgagctaacacttaataggaactnnnnnnntatggatactaatattatgtgactatattt 391  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  15580891 aaaaaaggaagcaatattgagctaacacttaataggaactaaaaaaatatggatactaatattatgtgactatattt 15580967  T

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Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 52 - 354
Target Start/End: Complemental strand, 8333904 - 8333604
Alignment:
Q  52 attcatttgcagtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccagttaatctagc 151  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||   || ||| ||||||    
T  8333904 attcatttgcagtatttca-tctagatcagaaaatgtcaccttttgtagactttgttgcttttcctgctttaataaaagaacagattcatttagtctagc 8333806  T
Q  152 aagagtctcattactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaatatcaattgacattaca 251  Q
    |||||| |||| ||||||| ||||| ||||||||||||||||  || |||||||||| |||||  |||||||| ||| | |||||||||||||||||||     
T  8333805 aagagtttcatcactaatggattgttgtgcaccatttgatgagtcgttcaagcttggatggataccatttaaaatctccgaaatatcaattgacattact 8333706  T
Q  252 gctgaaatctcactgatagtactgatgtgacttttcactttctgctggcgtaagatctgagagaaaaaaggaagcaatattgagctaacacttaatagga 351  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||    
T  8333705 gctgaaagctcactgatagtactgatatgactcttcactttctgatggcgtatgttctgagagaaaaaaggaagc-atattaagctaacacttaatagga 8333607  T
Q  352 act 354  Q
    |||    
T  8333606 act 8333604  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 42312296 - 42312465
Alignment:
Q  62 agtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccagttaatctagcaagagtctca 161  Q
    ||||||||| |||| |||||| ||||||||||||| ||   |||||| |||||||||||| |||||| ||||| ||||||||  || ||||||||| |||    
T  42312296 agtatttca-tctacatcagagaaagtcaccttttatatt-tttgtt-cttttcctgcttcaatgaatgaacacccccagtttgtccagcaagagtgtca 42312392  T
Q  162 ttactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaa 234  Q
    ||  |||||| ||||||||| |  ||||||||| | ||||||||||| ||||| |||||||||||||||||||    
T  42312393 ttgataatgctttgtggtgctctgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaa 42312465  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 12049537 - 12049457
Alignment:
Q  15 gagacacatacatatacatgcagcaag-acacatacatattcatttgcagtatttcaatctagatcagaaaaagtcaccttt 95  Q
    ||||| ||||||||||||||||||||  |||| || | ||||||||||||||||||||||| |||||| |||||||||||||    
T  12049537 gagactcatacatatacatgcagcaatcacacgtataaattcatttgcagtatttcaatcttgatcag-aaaagtcaccttt 12049457  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 41326126 - 41326249
Alignment:
Q  111 ttttcctgctttaatgaaagaacagccccagttaatctagcaagagtctcattactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggt 210  Q
    |||||| |||| |||||| ||||| ||||||||  |||||||||||| |||||  |||||| ||||||||| |  ||||||||| | ||||||||||| |    
T  41326126 ttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgctttgtggtgctctctttgatgaatcactcaagcttggat 41326225  T
Q  211 ggatgtcatttaaagtcttccaaa 234  Q
    |||| ||||||||| |||||||||    
T  41326226 ggatttcatttaaattcttccaaa 41326249  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 47247117 - 47246947
Alignment:
Q  62 agtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccag-ttaatctagcaagagtctc 160  Q
    ||||||||| |||| |||| | ||||||||||||| ||   ||||||| ||||||||||| |||||| ||||| |||| | ||  |||||||||||| ||    
T  47247117 agtatttca-tctacatcatagaaagtcaccttttatatt-tttgttg-ttttcctgcttcaatgaatgaacaccccccgatttgtctagcaagagtgtc 47247021  T
Q  161 attactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaa 234  Q
    |||  |||||| ||||  ||| |  ||||||||| | ||||||||||| ||||| |||||||||| ||||||||    
T  47247020 attgataatgctttgtaatgctctgtttgatgaatcactcaagcttggatggatttcatttaaagccttccaaa 47246947  T

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Target: scaffold0003 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 34868 - 35048
Alignment:
Q  59 tgcagtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccagttaatctagcaagagtc 158  Q
    |||||||||||| | ||||||| ||||||||||||||  |||||||||||| ||||| ||||| || ||| ||||| ||||||||||| || |||||       
T  34868 tgcagtatttcatt-tagatcataaaaagtcacctttcatagcctttgttg-ttttcatgcttcaaggaatgaacacccccagttaatatatcaagaaag 34965  T
Q  159 tcattactaatgcattgtggtgca-ccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaatatcaa 240  Q
    |  ||  | |||| |||| || || |||||||||||| | ||||||||||| |||||||||||| |||||||||||| |||||    
T  34966 ttgttcatgatgctttgttgttcatccatttgatgaaacactcaagcttggatggatgtcattttaagtcttccaaaaatcaa 35048  T

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Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 41538 - 41718
Alignment:
Q  59 tgcagtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccagttaatctagcaagagtc 158  Q
    |||||||||||| | ||||||| ||||||||||||||  |||||||||||| ||||||||||| || ||| ||||| |  |||||||| || |||||       
T  41538 tgcagtatttca-tatagatcataaaaagtcacctttcatagcctttgttg-ttttcctgcttcaaggaatgaacaccatcagttaatatatcaagaaag 41635  T
Q  159 tcattactaatgcattgtggtgca-ccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaatatcaa 240  Q
    |  ||  | |||| |||| || || |||||||||||| | ||||||||||| |||||||||||| |||||||||||| |||||    
T  41636 ttgttcatgatgctttgttgttcatccatttgatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaa 41718  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 20909228 - 20909354
Alignment:
Q  111 ttttcctgctttaatgaaagaacagccccagttaatctagcaagagtctcattactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggt 210  Q
    |||||| |||| |||||| ||||| ||||||||  |||||||||||| |||||  |||||| || ||||||    ||||||||| | ||||||||||| |    
T  20909228 ttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgctttatggtgctatgtttgatgaatcactcaagcttggat 20909327  T
Q  211 ggatgtcatttaaagtcttccaaatat 237  Q
    |||| ||||||||||||||||||||||    
T  20909328 ggatttcatttaaagtcttccaaatat 20909354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 20923676 - 20923802
Alignment:
Q  111 ttttcctgctttaatgaaagaacagccccagttaatctagcaagagtctcattactaatgcattgtggtgcaccatttgatgaaccgctcaagcttgggt 210  Q
    |||||| |||| |||||| ||||| ||||||||  |||||||||||| |||||  |||||| || ||||||    ||||||||| | ||||||||||| |    
T  20923676 ttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgctttatggtgctatgtttgatgaatcactcaagcttggat 20923775  T
Q  211 ggatgtcatttaaagtcttccaaatat 237  Q
    |||| ||||||||||||||||||||||    
T  20923776 ggatttcatttaaagtcttccaaatat 20923802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 27445820 - 27445640
Alignment:
Q  59 tgcagtatttcaatctagatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacagccccagttaatctagcaagagtc 158  Q
    |||||||||||| | ||||||| ||||||||||||||  |||||||||||| ||||||||||| || ||| ||||| |  |||||||| || |||||       
T  27445820 tgcagtatttca-tatagatcataaaaagtcacctttcatagcctttgttg-ttttcctgcttcaaggaatgaacaccatcagttaatatatcaagaaag 27445723  T
Q  159 tcattactaatgcattgtggtgca-ccatttgatgaaccgctcaagcttgggtggatgtcatttaaagtcttccaaatatcaa 240  Q
    |  ||  | |||| |||| || || |||||||||||| | ||||||||||| |||||||||||| |||||||||||| |||||    
T  27445722 ttgttcatgatgctttgttgttcatccatttgatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaa 27445640  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 11909635 - 11909676
Alignment:
Q  307 tctgagagaaaaaaggaagcaatattgagctaacacttaata 348  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  11909635 tctgagagagaaaaggaagcaataatgagctcacacttaata 11909676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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