View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_19 (Length: 405)
Name: NF3352_low_19
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 81 - 389
Target Start/End: Complemental strand, 37658242 - 37657934
Alignment:
| Q |
81 |
cttgtgaattacaccattttcttcctagttcctagactaaaatgtatacataaagaaacaaaatagttgaaacagagcatgtcaatgagcaacaacacca |
180 |
Q |
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| T |
37658242 |
cttgtgaattacaccattttcttcctagttcctagactaaaatgtatacataaagaaacaaaatagttgaaacagagcatatcaatgagcaacaccacca |
37658143 |
T |
|
| Q |
181 |
ccaccatcactatcctttttccttgtaacacgaatgtagcaaaaaacaacagcaaaagttgcactaactaacccaccaatgatcacacctccaccagcca |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37658142 |
ccaccatcactatcctttttccttgtaacacgaatgtagcaaaaaacaacagcaaaagttgcactaactaacccaccaatgatcacacctccaccagcca |
37658043 |
T |
|
| Q |
281 |
tttctgacgatgaagaatgatgttttcccatccttctataatctggagccatagcgttttcttcttttgattctctttctccttcttcctttgatgtggt |
380 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37658042 |
tttctgatgatgaagaatgatgttttcccatccttctataatctggagccatagcgttttcttcttttgattctctttcaccttcttcctttgatgtggt |
37657943 |
T |
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| Q |
381 |
agaaatttt |
389 |
Q |
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||||||||| |
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| T |
37657942 |
agaaatttt |
37657934 |
T |
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