View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_20 (Length: 397)

Name: NF3352_low_20
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_20
NF3352_low_20
[»] chr6 (1 HSPs)
chr6 (1-386)||(8326328-8326711)
[»] chr7 (7 HSPs)
chr7 (125-207)||(42469368-42469450)
chr7 (301-358)||(5265748-5265805)
chr7 (301-370)||(28427214-28427283)
chr7 (299-346)||(25200998-25201045)
chr7 (214-245)||(28427119-28427150)
chr7 (301-347)||(42470003-42470049)
chr7 (214-242)||(42469908-42469936)
[»] chr2 (3 HSPs)
chr2 (125-208)||(39168952-39169035)
chr2 (266-384)||(17161095-17161213)
chr2 (301-370)||(39169586-39169655)
[»] chr1 (1 HSPs)
chr1 (267-346)||(34339795-34339874)
[»] chr8 (2 HSPs)
chr8 (301-370)||(6931603-6931672)
chr8 (216-246)||(6931735-6931765)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 8326328 - 8326711
Alignment:
Q  1 tacctcattcaatttaaattatgtatcccaaataaaaattattcttgctactgttattactaactatatatatttttatatgatgtaaattcagtggtac 100  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  8326328 tacctcattcaat--aaattatgtatcctaaataaaagttattcttgctactattattactaactatatatattcttatatgatgtaaatttagtggtac 8326425  T
Q  101 attcaatttatttgtgcttaatgtttattttgataaagttgcatgtaaatttgtgtggaagggatgagaggacgaaggtatttatttggttagttgggat 200  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  8326426 actcaatctatttgtgcttaatgtttattttgataaagttgcatgtagatttgtgtggaagggatgagagaacgaaggtatttatttgattagttaggat 8326525  T
Q  201 aaaatgacattcatgatgtgtgggtgtggaccaactgcacatctgattgtttcaaaaggctattgatggttaatgggagtccacacttcgtacatcggga 300  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  8326526 aaaatgacattcacgatgtgtgggtctggatcaactgcacatctgattgtttcaaaaggctattggtggttaatgggagtccacacttcgttcctcggga 8326625  T
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaattgtgacgcgactatgttcat 386  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8326626 aagaaagttgaaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaattgtgacgcgactatgttcat 8326711  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 42469368 - 42469450
Alignment:
Q  125 ttattttgataaagttgcatgtaaatttgtgtggaagggatgagaggacgaaggtatttatttggttagttgggataaaatga 207  Q
    ||||||||| |||||||| |||| |||||| |||||||| | ||||||| |||||||| ||||||||||||||||||||||||    
T  42469368 ttattttgacaaagttgcttgtagatttgtttggaaggggtcagaggacaaaggtattcatttggttagttgggataaaatga 42469450  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 5265748 - 5265805
Alignment:
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttctt 358  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||||| || |||||||    
T  5265748 aagaaggttggaattggatttgacgtctttgtgttccttcaaatatttagttcttctt 5265805  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 28427214 - 28427283
Alignment:
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaattgtg 370  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||| |  | |||||||| ||||||||    
T  28427214 aagaaagttggaattggatttgacgcctttgtgttccttcaaatattcaatttttcttatggcaattgtg 28427283  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 25200998 - 25201045
Alignment:
Q  299 gaaagaaagttggaattggatttcacgtctttgtgctccttcaaatat 346  Q
    |||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  25200998 gaaagaaagttgaaattggaattaacgtctttgtgttccttcaaatat 25201045  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 28427119 - 28427150
Alignment:
Q  214 tgatgtgtgggtgtggaccaactgcacatctg 245  Q
    ||||||||||||||||||||||||||||||||    
T  28427119 tgatgtgtgggtgtggaccaactgcacatctg 28427150  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 42470003 - 42470049
Alignment:
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatatt 347  Q
    |||||||||||||||||||||  || ||||||| |||||||||||||    
T  42470003 aagaaagttggaattggatttggcgcctttgtgttccttcaaatatt 42470049  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 42469908 - 42469936
Alignment:
Q  214 tgatgtgtgggtgtggaccaactgcacat 242  Q
    |||||||||||||||||||||||||||||    
T  42469908 tgatgtgtgggtgtggaccaactgcacat 42469936  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 39168952 - 39169035
Alignment:
Q  125 ttattttgataaagttgcatgtaaatttgtgtggaagggatgagaggacgaaggtatttatttggttagttgggataaaatgac 208  Q
    |||| ||||||||||||| |||| |||||| |||||||| | ||||||| | |||||| |||||||||||||||||||||||||    
T  39168952 ttatcttgataaagttgcttgtagatttgtttggaaggggttagaggacaatggtattcatttggttagttgggataaaatgac 39169035  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 17161095 - 17161213
Alignment:
Q  266 atggttaatgggagtccacacttcgtacatcgggaaagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaa 365  Q
    ||||||||||||||  || ||||| |   ||||| |||||||||||||||||||||  |  || |||| |||||||||||||  | |||||||||| |||    
T  17161095 atggttaatgggagctcatacttcattgctcggggaagaaagttggaattggatttggcacctctgtgttccttcaaatattcggttcttcttatggcaa 17161194  T
Q  366 ttgtgacgcgactatgttc 384  Q
    ||||| | ||||| |||||    
T  17161195 ttgtgtcacgactctgttc 17161213  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 39169586 - 39169655
Alignment:
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaattgtg 370  Q
    |||||||||||||||||| ||  || ||||||| ||||||||||||| |  | |||||||| ||||||||    
T  39169586 aagaaagttggaattggaattggcgcctttgtgttccttcaaatattcaatttttcttatggcaattgtg 39169655  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 34339874 - 34339795
Alignment:
Q  267 tggttaatgggagtccacacttcgtacatcgggaaagaaagttggaattggatttcacgtctttgtgctccttcaaatat 346  Q
    ||||||||||||| ||| |||||||   ||||| |||||||||||||||| ||||| || || |||| ||||||||||||    
T  34339874 tggttaatgggagcccatacttcgttgctcggggaagaaagttggaattgaatttcgcgactatgtgttccttcaaatat 34339795  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 6931672 - 6931603
Alignment:
Q  301 aagaaagttggaattggatttcacgtctttgtgctccttcaaatattaagctcttcttatgacaattgtg 370  Q
    |||||||||||||||||||||  || ||||||| ||||||||||||| |  | |||||||| ||||||||    
T  6931672 aagaaagttggaattggatttggcgcctttgtgttccttcaaatattcaatttttcttatggcaattgtg 6931603  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 6931765 - 6931735
Alignment:
Q  216 atgtgtgggtgtggaccaactgcacatctga 246  Q
    |||||||||||||||||||||||||||||||    
T  6931765 atgtgtgggtgtggaccaactgcacatctga 6931735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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