View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_22 (Length: 374)
Name: NF3352_low_22
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 32379062 - 32379425
Alignment:
| Q |
1 |
ctttaatcactaaggaaataagtaaaaatttacaagcagttttgtagaagtaagattagtagccctacctgctgcactctacatctctagttacctgatt |
100 |
Q |
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| T |
32379062 |
ctttaatcactaaggaaataagtaaaaatttacaagcagttttgtagaagtaagattagtagccctacctgctgcactctacatctctagttacctgatt |
32379161 |
T |
|
| Q |
101 |
taaacgaagactttagttcataccgcaaacagactaatgtatctaaaacatcatcatcaaaagattcagcatcctctattcttgcgatagacatcaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32379162 |
taaacgaagactttagttcataccgcaaacagactaatgtatctaaaacatcatcatcaaaagattcaacatcctctattcttgcgatagacatcaaggt |
32379261 |
T |
|
| Q |
201 |
cttcagccattcttcgtgaagagatgaaaactctgatctctgttcacttgacctaaagtttttgccaattgatattttcatctgctggcttgcctttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32379262 |
cttcagccattcttcgtgaagagatgaaaactctgatctctgttcacttgacctaaagtttttgccaattgatattttcatctgctggcttgcctttgaa |
32379361 |
T |
|
| Q |
301 |
gcaacgttcacagttttttctgggattccagccataagtgcaacctgcaatccgtagctctctg |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32379362 |
gcaacgttcacagttttttctgggattccagccataagtgcaacctgcaatccgtagctctctg |
32379425 |
T |
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