View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3352_low_27 (Length: 328)
Name: NF3352_low_27
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 4460594 - 4460288
Alignment:
| Q |
1 |
tacacttgttgaatttttacattttagttttatatatattcttagtcatttttctacatatctaggcaattttcgcaagagatttttactgattaattat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
4460594 |
tacacttgttgaatttttacatttttgttttatat----tctt-gtcatttttctacatatctaggcaattttcgcaagggattttta------aattat |
4460506 |
T |
|
| Q |
101 |
ttgaaatcaatctcattttctgacagagctagcaagaatcaataactggttattcaagtttcgatttgtggttttttaaataaaaaagtcgaacttcatt |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4460505 |
ttgaaattaatctcattttctgacaaagctagcaagaatcaataactggttattcaagtttcgatttgtggttttttaaataaaaaagtcgaacttcatt |
4460406 |
T |
|
| Q |
201 |
atttatatatttttccattttgaaatttatgtatgcttactaattcattcaccatgttgctgccatgtctgtttgggaatctcaaagatggacgcctact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4460405 |
atttatatatttttccattttgaaatttatgtatgcttactaattcattcaccatgttgctgccatgtctgtttgggaatctcaaagatggacgcctact |
4460306 |
T |
|
| Q |
301 |
ttatattgttgatgatgt |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4460305 |
ttatattgttgatgatgt |
4460288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 4460026 - 4459925
Alignment:
| Q |
58 |
atatctaggcaattttcgcaagagatttttactgattaattatttgaaatcaatctcatttt-ctgacagagctagcaagaatcaataactggttattca |
156 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||| | |||||||| ||||||||||| |||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
4460026 |
atatataggcaatttttgcaagagatttttagtgattaggtttttgaaattaatctcattttcctgacaaatctagtaagaatcaataacgggttattca |
4459927 |
T |
|
| Q |
157 |
ag |
158 |
Q |
| |
|
|| |
|
|
| T |
4459926 |
ag |
4459925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 4458871 - 4458753
Alignment:
| Q |
151 |
tattcaagtttcgatttgtggtttttt---aaataaaaaagtcgaacttcattatttatatatttttccattttgaaatttatgtat-gcttactaattc |
246 |
Q |
| |
|
|||||||||||| ||||||||||||| | | |||||||| ||| |||||||||||||||||||||| ||||| ||||||||| | | ||||||||| |
|
|
| T |
4458871 |
tattcaagtttcagtttgtggttttttttgacaaaaaaaagttgaatttcattatttatatatttttcc-ttttg-aatttatgtctggtttactaattt |
4458774 |
T |
|
| Q |
247 |
attcaccatgttgctgccatg |
267 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
4458773 |
ttccaccatgtcgctgccatg |
4458753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 4395657 - 4395617
Alignment:
| Q |
261 |
tgccatgtctgtttgggaatctcaaagatggacgcctactt |
301 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
4395657 |
tgccatgtttgtttggaaatctcaaagatgaacgcctactt |
4395617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 4474005 - 4473945
Alignment:
| Q |
256 |
gttgctgccatgtctgtttgggaatctcaaagatggacgcctactttatattgttgatgat |
316 |
Q |
| |
|
|||| |||||||| | |||| ||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
4474005 |
gttgatgccatgttcgattggaaatctcaaagatggacggctactatatattgttaatgat |
4473945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 18049669 - 18049709
Alignment:
| Q |
261 |
tgccatgtctgtttgggaatctcaaagatggacgcctactt |
301 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
18049669 |
tgccatgtttgtttggaaatctcaaagatgaacgcctactt |
18049709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University