View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_28 (Length: 310)
Name: NF3352_low_28
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 16953807 - 16954092
Alignment:
| Q |
19 |
ttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatccattaagtaagccagaagataaagccatgagtagaatagcagcctc |
118 |
Q |
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| T |
16953807 |
ttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatccattaagtaagccagaagataaagccatgagtagaatagcagcctc |
16953906 |
T |
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| Q |
119 |
cttcacatcttgagggaaaacttgatgggaagccaagttgttgctccaacttgttatcaaatcttcaaaattattacacttgttttcacttttacccttc |
218 |
Q |
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| T |
16953907 |
cttcacatcttgagggaaaacttgatgggaagccaagttgttgctccaacttgttatcaaatcttcaaaattattacacttgttttcacttttacccttc |
16954006 |
T |
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| Q |
219 |
cttttcaatagttgtgcacattgatcagtttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgc |
304 |
Q |
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| T |
16954007 |
cttttcaatagttgtgcacattgatcagtttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgc |
16954092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 17023627 - 17023683
Alignment:
| Q |
248 |
ttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgc |
304 |
Q |
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| T |
17023627 |
ttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgc |
17023683 |
T |
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