View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_3 (Length: 604)
Name: NF3352_low_3
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 39166291 - 39165722
Alignment:
| Q |
18 |
tgttctaattctgatggctgggaatacacatcccaaaatatactcttgcttaaaggtacaaaattttgtttacaaggagaaggagaagggaaacaagtga |
117 |
Q |
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| T |
39166291 |
tgttctaattctgatggctgggaatacacaccccaaaatatactcttacttaaaggtacaaaattttgtttacaaggagaaggagaagggaaacaagtga |
39166192 |
T |
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| Q |
118 |
aacttggaacaacatgttcaggtccggagtcaacatgggaaatgatatctgattcaaagatgcatctctcatataatgtcaacaacaatggttctacttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166191 |
aacttggaacaacatgttcaggtccggagtcaacatgggaaatgatatctgattcaaagatgcatctctcatataatgtcaacaacaatggttctacttc |
39166092 |
T |
|
| Q |
218 |
tagtgtttgtttggatgtagatgctaacaacatagttgtcaccaatagttgcaaatgtattagcaaagttaacacatgtgaccctgcaagccaatggttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166091 |
tagtgtttgtttggatgtagatgctaacaacatagttgtcaccaatagttgcaaatgtattagcaaagttaacacatgtgaccctgcaagccaatggttc |
39165992 |
T |
|
| Q |
318 |
aaacttgttgacagtacaagaaagttgaactgaagattatctatagatttgatgttcagattataagaacgtgaccaacaagacaattctgaaaatcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39165991 |
aaacttgttgacagtacaagaaagttgaactgaagattatctatagatttgatgttcagattattagaacgtgaccaacaagacaattctgaaaatcatt |
39165892 |
T |
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| Q |
418 |
gagctcaagtgctcaacataagttatcccaagtctcaacaccattatcgttgatttatctctgacataagttatcccaatcctatgtagtactttgtagt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39165891 |
gagctcaagtgctcaacataagttatcccaagtctcaacaccattatcgttgatttatctctgacataagttatcccaatcttatgtagtactttgtagt |
39165792 |
T |
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| Q |
518 |
tgggtatcactgtactaatgcttaattaatagagttttagagggtttaaaaaattctctaaattaattgt |
587 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39165791 |
tgggtatcattgtactaatgcttaattaatagagttttagagggtttaaaaaattctctaaattaattgt |
39165722 |
T |
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