View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_30 (Length: 298)
Name: NF3352_low_30
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 3233161 - 3233426
Alignment:
| Q |
20 |
cctaatgtatttaactttaacccattcgatcatatttaactttaattaggtatctcgtgcaaatttaaaagattgtacaacttgatatctaataaattgn |
119 |
Q |
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| T |
3233161 |
cctaatgtatttaactttaacccattcgatcatatttaactttaattaggtatctcgtgcaaatttaaaagattgtacaacttgatatctaataaattgt |
3233260 |
T |
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| Q |
120 |
nnnnnnnnatgctgcaagtgttggaattatgtttggaatatcaacaaatactaaaactttgtataaatagttgttttggttttcacctatgatcattgtg |
219 |
Q |
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| T |
3233261 |
ttttttt-atgctgcaagtgttggaattatgtttggaatatcaacatatactaaaactttgtataaatagttgttttggttttcacctatgatcattgtg |
3233359 |
T |
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| Q |
220 |
tttaacacttaatattttcctgtgacaaatgttattacgtcaattgttctgttaatattttcttcat |
286 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233360 |
tttaacacttaatattttcctatgacaaatgttattacgtcaattgttctgttaatattttcttcat |
3233426 |
T |
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