View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_31 (Length: 289)
Name: NF3352_low_31
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_31 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 53127100 - 53126830
Alignment:
| Q |
19 |
cacaactcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagt |
118 |
Q |
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| T |
53127100 |
cacaactcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtatggcaggacttagtattacgaaggacttggctagt |
53127001 |
T |
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| Q |
119 |
gaggaagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtaca |
218 |
Q |
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| T |
53127000 |
gaggaagctaatgaatatctgaagaatgcatgcttgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtaca |
53126901 |
T |
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| Q |
219 |
atctgtttctttgttggcctataatatgcttcattttcaattttcctttttattcaaacgccggttgtaac |
289 |
Q |
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| T |
53126900 |
atctgtttctttgttggcctataatatgctttattttcaattttcctttttattcaaaagcgggttgtaac |
53126830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 53109269 - 53109037
Alignment:
| Q |
23 |
actcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgagg |
122 |
Q |
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| T |
53109269 |
actcatttgtatttttatt---gttacaggaggattgatatgattgaggaactagagagtatgacaggacttagtattcccaaggacttggccagtgagg |
53109173 |
T |
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| Q |
123 |
aagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtacaatct |
222 |
Q |
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| T |
53109172 |
aagctaatgaatatctgaagaatgtatgcttgaactatgacatcaaatgcgctccccctcaaaccactgctcggttgatggataaagtaatgtacaatct |
53109073 |
T |
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| Q |
223 |
gtttctttgttggcctataatatgcttcattttcaa |
258 |
Q |
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| T |
53109072 |
gtttctttgttggcctataatatgctttgttttcaa |
53109037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 53114674 - 53114431
Alignment:
| Q |
46 |
ttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaat |
145 |
Q |
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| T |
53114674 |
ttacaggaggattgatatgattgaggaactagagagtatggcaggacttagtattcccaaggacttggccactgacgaagctaatcaatatctgaagaat |
53114575 |
T |
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| Q |
146 |
gcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtacaatctgtttctttgttggcctataatat |
245 |
Q |
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| T |
53114574 |
gcatgcttggagtatgacattaaatgcgctcccgctcaaacaactgctcgattgttggataaagtaattcacaatctgtttctttgttggcctataatat |
53114475 |
T |
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| Q |
246 |
gcttcattttcaattttcctttttattcaaacgccggttgtaac |
289 |
Q |
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| T |
53114474 |
gctttatttccaaattttgtttttattcaaaatcaggttgtaac |
53114431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 53118569 - 53118380
Alignment:
| Q |
75 |
tagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgc |
174 |
Q |
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| T |
53118569 |
tagagagtatggtaggacttaatattccgaaggacttggccagtgaggaagctaatgaatatctgaagaatgcatgcttgaagtatgacaacaaatgcgc |
53118470 |
T |
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| Q |
175 |
tccccctcaaaccactgctc-ggt-tgttggataaagtaatgtacaatctgtttctttgttggcctataatatgcttcattttcaatttt |
262 |
Q |
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| T |
53118469 |
tcgccctcaaaccactgctctggtgtgttggataaagtaatgtacaatctgtttctttgttggcctataatatgctttattttcaatttt |
53118380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 15839918 - 15840086
Alignment:
| Q |
45 |
gttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaa |
144 |
Q |
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| T |
15839918 |
gttacagaaggattgacatgattgaaggactagaggagatggcaggcctcagtattcctaaagacttgacgagtgctgaagctaatcaatatctaaggga |
15840017 |
T |
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| Q |
145 |
tgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaat |
213 |
Q |
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| T |
15840018 |
tgcctgcttgaagtacgaaatcaaatgtccccctcctgaaacaactgcacgtttgttggataaggtaat |
15840086 |
T |
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