View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_39 (Length: 250)

Name: NF3352_low_39
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_39
NF3352_low_39
[»] chr8 (3 HSPs)
chr8 (50-189)||(43647596-43647735)
chr8 (188-231)||(43647755-43647798)
chr8 (188-222)||(43647503-43647537)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 43647596 - 43647735
Alignment:
Q  50 cactcttctccaccgggatatacaccatctccaataactcctgtggtgtcgccaccatctcctgctcctcattatggatcatctccaccccctcattccc 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43647596 cactcttctccaccgggatatacaccatctccaataactcctgtggtgtcgccaccatctcctgctcctcattatggatcatccccaccccctcattccc 43647695  T
Q  150 cnnnnnnnncaccaccaccgggaacgtccccttcctctcc 189  Q
    |        |||||||||||||||||||||||||||||||    
T  43647696 cttttttttcaccaccaccgggaacgtccccttcctctcc 43647735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 43647755 - 43647798
Alignment:
Q  188 ccttcctttccaccaccaacacactcttctccgcctgcgcatcc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43647755 ccttcctttccaccaccaacacactcttctccgcctgcgcatcc 43647798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 43647503 - 43647537
Alignment:
Q  188 ccttcctttccaccaccaacacactcttctccgcc 222  Q
    |||||| ||||||||||||||||||||||||||||    
T  43647503 ccttccattccaccaccaacacactcttctccgcc 43647537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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