View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_4 (Length: 586)
Name: NF3352_low_4
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 128 - 581
Target Start/End: Original strand, 33298304 - 33298757
Alignment:
| Q |
128 |
ttaaggtggcttttgttggaggagctatagaaacttgtttaatattcaaagttt-aagtctttcacgtctcttgatccatgagacaatttttacaaccat |
226 |
Q |
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| T |
33298304 |
ttaaggtggcttttgttggaggaggtatagaaacttgtttagtattcaaagttttaagtctttcacgtctcttgatccatgagaccatttttacaaccat |
33298403 |
T |
|
| Q |
227 |
ggcatgctgtttttgaaccttggaatttgtttaactaatgcatgatattgtgtaatgtattctacgtagttactgattacatgtaactctttctcaataa |
326 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298404 |
ggcatgctgttgttgaaccttggaatttgtttaactaatgcatgatattgtgtaatgtattctacgtagttactgattacatgtaactctttctcaataa |
33298503 |
T |
|
| Q |
327 |
gacacaaacatagttacgtggacctttcccnnnnnnnggaaatgttgttggacattatttgcttgatattagtggatattgttatatacgacaatgtaca |
426 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298504 |
gacacaaacatagttacgtggacctttccctttttttggaaatgttgt-ggacattatttgcttgatattagtggatattgttatatacgacaatgtaca |
33298602 |
T |
|
| Q |
427 |
tgtgacataacacatgtaatttgcagtttacttgtaaatatgtgtaattgagatgaagccagccccagggcatgaaattcgaactttccatcaatataga |
526 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
33298603 |
tgtgacataacacatgtaatttgcagtttacttgcaaatatgtgtaattgagatgaagctagcaccagggcatgaaattcgaactttccatcaatataga |
33298702 |
T |
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| Q |
527 |
aactttcaaaagtttactatcttattgtgtatcagtatcactaacgcaacctatg |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298703 |
aactttcaaaagtttactatcttattgtgtatcagtatcactaacgcaacctatg |
33298757 |
T |
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