View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_43 (Length: 242)
Name: NF3352_low_43
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 55172611 - 55172381
Alignment:
| Q |
12 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
111 |
Q |
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| T |
55172611 |
catcatcaagctagctggcaaataattaattcatttattgattataatgaatgaacagattgtttcacaacataataaaaggaacttcgtgaagtctgct |
55172512 |
T |
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| Q |
112 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacaatgc |
211 |
Q |
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| T |
55172511 |
gtcgcaaacaacctcaaatgggagctgtttcttgaggcaattccatcatctaagaaacttgaatcaaatcaaaaaattccattagagctttacacattgc |
55172412 |
T |
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| Q |
212 |
ttaaagacaccacagattatggatggtacac |
242 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55172411 |
ttaaagacaccacagattatggatggtacac |
55172381 |
T |
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