View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3352_low_44 (Length: 240)
Name: NF3352_low_44
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_44 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 43461797 - 43462036
Alignment:
| Q |
2 |
agagactaaagtgactatttgcacaaatttttattcaatctaatctcttatttgatttgattgatagaaaagaaagaaaaatcaagagccagggatgaat |
101 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43461797 |
agagactaaagtaactatttgctcatatttttattcaatctaatatcttatttgatttgattgatagaaaagaaagaaaaatcaagagccagggcggaat |
43461896 |
T |
|
| Q |
102 |
tgtattcttagttactagtatcagtaggaaccgaaccaatgtcttggaataataat-actaaatctggaacgtccattctatgtcgctcattcctctatt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43461897 |
tgtattcttagttactagtattagtaggaaccgaaccaatgtcttggaataataataactaaatctggaacgtccattctatgtcgctcattcctctatt |
43461996 |
T |
|
| Q |
201 |
ggcgttggatttcctcgtacgcgtttcctccaaattttga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43461997 |
ggcgttggatttcctcgtacgcgtttcctccaaattttga |
43462036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 43445241 - 43445307
Alignment:
| Q |
161 |
aaatctggaacgtccattctatgtcgctcattcctctattggcgttggatttcctcgtacgcgtttc |
227 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
43445241 |
aaatctggaacgtccattctatatttgtcattcctccttcgtcgttggatttcctcgtacgcgtttc |
43445307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University