View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3352_low_45 (Length: 239)
Name: NF3352_low_45
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 5966753 - 5966960
Alignment:
| Q |
14 |
caaaggcaaaaaccatttccactcacgagcatttcacgtgcttacatgtcttgttagtgttctacagctttgcgttttggtctattaaggtatttttaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5966753 |
caaaggcaaaaaccatttccactcacgagcatttcacgtgtttacatgtcttgttagtgttctacagctttgcgttttggtctattaaggtatttttaga |
5966852 |
T |
|
| Q |
114 |
ttaaagtcataaagggacatggtttagacagaatccatagtgaatgctatcaagaaatatttaaagttcccatgtcccttatggttacacatttctctcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5966853 |
ttaaagtcataaagggacatggtttagacagaatccatagtgaatgctatcaagaaatatttaaagttcccatgtcccttatggttacacatttctctcc |
5966952 |
T |
|
| Q |
214 |
cacacctt |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
5966953 |
cacacctt |
5966960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University