View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3352_low_46 (Length: 238)

Name: NF3352_low_46
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3352_low_46
NF3352_low_46
[»] chr4 (2 HSPs)
chr4 (23-223)||(39482305-39482500)
chr4 (18-220)||(51862080-51862277)
[»] chr3 (3 HSPs)
chr3 (18-164)||(22157786-22157933)
chr3 (128-223)||(22157700-22157790)
chr3 (25-217)||(9765844-9766030)
[»] chr7 (2 HSPs)
chr7 (18-152)||(9332858-9332992)
chr7 (128-220)||(9332763-9332849)
[»] chr8 (3 HSPs)
chr8 (160-216)||(22647851-22647907)
chr8 (87-152)||(22647938-22648003)
chr8 (25-143)||(43651549-43651666)
[»] scaffold0755 (2 HSPs)
scaffold0755 (87-152)||(5435-5500)
scaffold0755 (160-216)||(5531-5584)
[»] chr5 (3 HSPs)
chr5 (25-217)||(21114689-21114875)
chr5 (87-152)||(27030052-27030117)
chr5 (160-216)||(27030148-27030204)
[»] chr6 (1 HSPs)
chr6 (160-220)||(13550189-13550249)
[»] chr2 (1 HSPs)
chr2 (165-193)||(24863506-24863534)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 39482500 - 39482305
Alignment:
Q  23 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39482500 gttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcc 39482401  T
Q  123 attggtttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggtca 222  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  39482400 attggtttcagaacaaagagaaagatacatactt-----tcatcttacacttcttatttttaaattcaatttcagtatgaatggatgatttagttggtca 39482306  T

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Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 51862080 - 51862277
Alignment:
Q  18 ctattgttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttat 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51862080 ctattgttccatattacaattgaagagacatttcatctatatttagctagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttat 51862179  T
Q  118 catctattggtttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagtt 217  Q
    |||| |||| |||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  51862180 catccattgatttcagaacaaagagaaagatacatac-----tttcatcttacatttcttatttttaatttcaatttcagtatgaatggatgatttagtt 51862274  T

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Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 22157933 - 22157786
Alignment:
Q  18 ctattgttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttat 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22157933 ctattgttccagattacaattgaagagacatttcatctatatttagatagggaaacatgacaggatttcaccaaatatcaatatttattatctcttttat 22157834  T
Q  118 catctattggtttcagaacaaagagaaagataca-tactttcatttca 164  Q
    |||| |||| |||||||||||||||||||||||| | |||||||||||    
T  22157833 catccattgatttcagaacaaagagaaagatacatttctttcatttca 22157786  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 22157790 - 22157700
Alignment:
Q  128 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggtcat 223  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||    
T  22157790 tttcagaacaaagagaaagatacatactttcat-----cttacacttcttaatttcaatttcaatttcagtatgaatggatgatttagttggtcat 22157700  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 9765844 - 9766030
Alignment:
Q  25 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 123  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||| ||| ||| |    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttctatgatcca 9765941  T
Q  124 ttggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 217  Q
     || |||||||||||||||  |||||||   ||||| | ||| | |||||||||| |||||||||||||||  || |||||||||| ||||||||    
T  9765942 atgatttcagaacaaagag--agataca---tttca-tccatttgacacttcttattttttaatttcaattttagtatgaatggataatttagtt 9766030  T

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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 9332992 - 9332858
Alignment:
Q  18 ctattgttccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttat 117  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9332992 ctattgttccagattacaattgaagagacatttcatctatctttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttat 9332893  T
Q  118 catctattggtttcagaacaaagagaaagatacat 152  Q
    |||| |||| |||||||||||||||||| ||||||    
T  9332892 catccattgatttcagaacaaagagaaaaatacat 9332858  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 9332849 - 9332763
Alignment:
Q  128 tttcagaacaaagagaaagatacatactttcatttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggt 220  Q
    |||||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  9332849 tttcagaacaaagagaaa-atacatactttcat-----cttacacttcttatttttaatttcaatttcagtatgaatggatgatttagttggt 9332763  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 22647907 - 22647851
Alignment:
Q  160 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 216  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  22647907 tttcatcttacacttcttatttttaatttcaatttcagtatgaatggattatttagt 22647851  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 22648003 - 22647938
Alignment:
Q  87 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 152  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||| ||||||||||    
T  22648003 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagataaagatacat 22647938  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 43651666 - 43651549
Alignment:
Q  25 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 123  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| |    
T  43651666 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcca 43651569  T
Q  124 ttggtttcagaacaaagaga 143  Q
     || ||||| ||||||||||    
T  43651568 atgatttcataacaaagaga 43651549  T

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Target: scaffold0755 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 5435 - 5500
Alignment:
Q  87 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 152  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  5435 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 5500  T

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Target: scaffold0755; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 5531 - 5584
Alignment:
Q  160 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 216  Q
    |||||||||||||||   |||||||||||||||| ||| |||||||||| |||||||    
T  5531 tttcatcttacactt---atttttaatttcaatttcagtatgaatggattatttagt 5584  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 21114875 - 21114689
Alignment:
Q  25 tccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatcta 123  Q
    ||||||||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||| ||| || ||| |||||| ||||||||||||| ||| |    
T  21114875 tccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcca 21114778  T
Q  124 ttggtttcagaacaaagagaaagatacatactttcatttcatcttacacttctta-tttttaatttcaattccagcatgaatggatgatttagtt 217  Q
     || |||||||||||||||  |||||||   |||||| | || | |||||||||| |||||||||||||||  || ||||||| || ||||||||    
T  21114777 atgatttcagaacaaagag--agataca---tttcatct-atttgacacttcttattttttaatttcaattttagtatgaatgaataatttagtt 21114689  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 27030052 - 27030117
Alignment:
Q  87 accaaatatcaatatttattatctcttttatcatctattggtttcagaacaaagagaaagatacat 152  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  27030052 accaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacat 27030117  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 27030148 - 27030204
Alignment:
Q  160 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagt 216  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||| |||||||    
T  27030148 tttcatcttacacttcttatttttaatttcaattttagtatgaatggattatttagt 27030204  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 13550249 - 13550189
Alignment:
Q  160 tttcatcttacacttcttatttttaatttcaattccagcatgaatggatgatttagttggt 220  Q
    ||||||| |||||||||||||||| ||||||||| ||| |||||||||| |||||||||||    
T  13550249 tttcatcatacacttcttattttttatttcaatttcagtatgaatggataatttagttggt 13550189  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 24863534 - 24863506
Alignment:
Q  165 tcttacacttcttatttttaatttcaatt 193  Q
    |||||||||||||||||||||||||||||    
T  24863534 tcttacacttcttatttttaatttcaatt 24863506  T

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