View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_5 (Length: 563)
Name: NF3352_low_5
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 12 - 563
Target Start/End: Complemental strand, 2018469 - 2017928
Alignment:
| Q |
12 |
agcacagaccaactcggtacaagcaacaatagtaaaacaatactcaatattttatgatacaatataatattttgcacacattagaatcgtccggatccat |
111 |
Q |
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| T |
2018469 |
agcacaaaccaactcggtacaagcaacaatagtacaacaatactcaatattttatgatacaatataatattttgcacacattagaatcgtccggatccat |
2018370 |
T |
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| Q |
112 |
ccgattagtcttaaaggtgaaaacaaatatcgagtattattgtgcttgctttaagcaacatgacaagcaaagagaaagaagcgggattagtaatccattc |
211 |
Q |
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| T |
2018369 |
ccgattagtcttaaaggtgaaaacaaatatcgagtattattgtgcttgctttaagcaacatgacaagcaaagagaaagaagcaggactaggaatccattc |
2018270 |
T |
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| Q |
212 |
aatttgtcccacttccgcctctttgcttgttcggttgtttaaagtacaatagtacttgtgatacagtataataatttgcaccccacttgattagattaga |
311 |
Q |
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| T |
2018269 |
aatttgtcccacttccgcctctttgcttgttc----------agtacaatagtacttgtgatacagtataatattttgcaccccacttgattagattaga |
2018180 |
T |
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| Q |
312 |
cattaggtttgaagaagagattgaccatggaaacttgtacttatgaaggtgaacagaaagaagtaaattatccatgaagtgagccacgatatgggtttag |
411 |
Q |
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| T |
2018179 |
cattaggtttgaagaagagattgaccatggaaacttgtacttatgaaggtgaacataaagaagaaaattatccatgaagtgagccacgatatgggtttag |
2018080 |
T |
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| Q |
412 |
actttgccaacagcagaaacctttctatatttttatcatattagtgtcatgatcataagggttaattcatttagaatatactccatgtgcgtgtaacaac |
511 |
Q |
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| T |
2018079 |
actttgccaacagcagaaacctttctatatttttatcatattagtgccatgatgataaggcttaattcatttagaatatactccatgtgcgtgtaacaac |
2017980 |
T |
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| Q |
512 |
aaattcactttcacatttggaatcgtaacaaagtcaagtgtttctttttata |
563 |
Q |
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| T |
2017979 |
aaattcactttcacatttggaatcgtaacaaagtcaagggtttctttttata |
2017928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 11355561 - 11355525
Alignment:
| Q |
51 |
atactcaatattttatgatacaatataatattttgca |
87 |
Q |
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| T |
11355561 |
atactcaatattttatgatacaatataatattttgca |
11355525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 11371833 - 11371869
Alignment:
| Q |
51 |
atactcaatattttatgatacaatataatattttgca |
87 |
Q |
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| T |
11371833 |
atactcaatattttatgatacaatataatattttgca |
11371869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 11355546 - 11355505
Alignment:
| Q |
270 |
tgatacagtataataatttgcaccccacttgattagattaga |
311 |
Q |
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| T |
11355546 |
tgatacaatataatattttgcatcccacttgattagattaga |
11355505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 11371848 - 11371889
Alignment:
| Q |
270 |
tgatacagtataataatttgcaccccacttgattagattaga |
311 |
Q |
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| T |
11371848 |
tgatacaatataatattttgcatcccacttgattagattaga |
11371889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 4083655 - 4083576
Alignment:
| Q |
286 |
tttgcaccccacttgattagattagacattaggtttgaagaagagattgaccatggaaac-ttgtacttatgaaggtgaa |
364 |
Q |
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| T |
4083655 |
tttgcatcccacttgattagattagattttagatgtgaagaagagactggccatagaaactttgtacttaagaaagtgaa |
4083576 |
T |
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