View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_50 (Length: 220)
Name: NF3352_low_50
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 20159472 - 20159562
Alignment:
| Q |
15 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
105 |
Q |
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| T |
20159472 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
20159562 |
T |
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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 20197997 - 20197907
Alignment:
| Q |
15 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
105 |
Q |
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| T |
20197997 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
20197907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 38228560 - 38228650
Alignment:
| Q |
15 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
105 |
Q |
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| T |
38228560 |
gagatgaatgttcatccatgtatcacaattaaccaaatgcccgttatatgtctctccatttttcagctccaccaactgttacaacaagttc |
38228650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 44282509 - 44282419
Alignment:
| Q |
15 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
105 |
Q |
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| T |
44282509 |
gagatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaagttc |
44282419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 39681032 - 39681117
Alignment:
| Q |
16 |
agatgaatgttcatccatgtatcacaattaaccaaatggccattatatgtctctccatttttcagctccaccaactgttacaacaa |
101 |
Q |
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| T |
39681032 |
agatggatgttcatccatgtatcacaatttaccaaatggccgttataagtctccccatttttcagttcaaccaactgttacaacaa |
39681117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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