View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_52 (Length: 212)
Name: NF3352_low_52
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 1734280 - 1734109
Alignment:
| Q |
17 |
atatttagaaaa-tggaggttggacaatatatatagt-aggggacccataaatctaatgtggttttaggttaagctataatggatgagcttacataaaca |
114 |
Q |
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| T |
1734280 |
atatttaaaaaagtggaggttggacaatatatatagtgaggggacccataaatttaatgtggttttaggttaagctataatggatgagcttacataaaca |
1734181 |
T |
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| Q |
115 |
tattttactttcatatatttgagttattagtcaatatcttagcataagacaaatatgtttatgctaattatc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1734180 |
tattttactttcatatatttgagttattagtcaatatcttagcataagacaaatatgtttatgctaattatc |
1734109 |
T |
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