View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_54 (Length: 201)
Name: NF3352_low_54
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_54 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 8141911 - 8141746
Alignment:
| Q |
36 |
attatatataaatctaaaatgtaactaaatttttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatg |
135 |
Q |
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| T |
8141911 |
attatatataaatctaaaatgtaactaaatatttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatg |
8141812 |
T |
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| Q |
136 |
aattccctttggatagacatagagccaagttaaatcagtctgcacaaccaaaaatttttgcttgat |
201 |
Q |
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| T |
8141811 |
aattccctttggatagacatagagccaagtcaaatcagtctgcacaaccaaaaagttttgcttgat |
8141746 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 8166139 - 8166008
Alignment:
| Q |
68 |
ttaccattttcagtaatgtacactggtggattgttgtatacattttttatgtgtgtaacaagatcatgaattccctttggatagacatagagccaagtta |
167 |
Q |
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| T |
8166139 |
ttaccattttcagtaatgtagactggtggattcttgtatgtatctttgatgtgtgtcacaagatgatgaattcccttcggatagacgtatagccagttca |
8166040 |
T |
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| Q |
168 |
aatcagtctgcaca-accaaaaatttttgctt |
198 |
Q |
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| T |
8166039 |
aatccgtctgcacagaccataaagttttgctt |
8166008 |
T |
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