View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352_low_6 (Length: 557)
Name: NF3352_low_6
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 42103886 - 42103540
Alignment:
| Q |
20 |
aaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattcc |
119 |
Q |
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| T |
42103886 |
aaagacgcattccaaaacgagctggataggtttggatcaccaatcactaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattcc |
42103787 |
T |
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| Q |
120 |
ttttagatgatttcatgggtatgggcgacgatgaaatgatacagtactttggcgggtagcagattattgaactagtaattcagcagaagctgtaagtgtt |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42103786 |
ttttagatgatttcatgggtatgggtgacgatgaaatgatacagtactttggcgggtagcagattattgaactagtaattcagcagaagctgtaagtgtt |
42103687 |
T |
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| Q |
220 |
attcctctcttaaattatgcttctaattagtttctgcgaattgtgactcgacttatttgttgtgttgtgtttgtttcatcnnnnnnncttccaggaacta |
319 |
Q |
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| T |
42103686 |
attcctctcttaaattatgcttctaattagttactgcgaattgtgactcgacttatttgttgtgttgtgtttgtttcatctttttttcttccaggaacta |
42103587 |
T |
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| Q |
320 |
cagaaattcaagcacttgttgtttaaatgcgtcaagttttacagatt |
366 |
Q |
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| T |
42103586 |
cagaaattcaagcacttgttgtttaaatgcatcaagttttacagatt |
42103540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 371 - 547
Target Start/End: Complemental strand, 42103486 - 42103310
Alignment:
| Q |
371 |
ttaacattgacaagtcttaaattttcggaacttgaaaaaccgatgaattttcttcaattaatgtatcaattgttaatgggctggctgaatatttaggtta |
470 |
Q |
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| T |
42103486 |
ttaacattgacaagtcttaaattttcggaacttgaagaaccgatgaattttcttcaattaatgtatcaattgttaatgggctggctgaatatttaggtta |
42103387 |
T |
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| Q |
471 |
atttctttgggataggaatgctgcaatgcttgcttctaaactatttaataaattatcagtgtttttggtcacctatg |
547 |
Q |
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| T |
42103386 |
atttctttgagataggaatgatgcaatgcttgcttctaaattatttaataaattatcagtgtttttggtcacctatg |
42103310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 42113076 - 42112854
Alignment:
| Q |
20 |
aaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattcc |
119 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113076 |
aaagacacattcccaaacgagctggataggtttggatcaccgttgagtaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattcc |
42112977 |
T |
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| Q |
120 |
ttttagatgatttcatgggtatgggcgacgatgaaatgatacagtactttggcgggtagcagattattg-aactagtaattcagcagaagctgtaagtgt |
218 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||||||| || |||| | |||||||||||||||||| |
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| T |
42112976 |
ttttagatgatttcatgggtttgggtgacgatgaaatgatgcagtactttggagcatagaagattattgaaattagtgactcagcagaagctgtaagttc |
42112877 |
T |
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| Q |
219 |
tattcctctcttaaattatgctt |
241 |
Q |
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||||| || |||||||||||||| |
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| T |
42112876 |
tattcttcacttaaattatgctt |
42112854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 42112582 - 42112528
Alignment:
| Q |
447 |
tgggctggctgaatatttaggttaatttctttgggataggaatgctgcaatgctt |
501 |
Q |
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| T |
42112582 |
tgggctggctgaatatttaggttaatttctttgggataggattgctgcaatgctt |
42112528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 42112804 - 42112734
Alignment:
| Q |
308 |
ttccaggaactacagaaattcaagcacttgttgtttaaatgcgtcaagttttacagattgatattaacatt |
378 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||| ||| || |||||||||||||||||| |
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| T |
42112804 |
ttccaggaactacagaaattcaaggacttgttgttcgaatgcgtgaaggttcgcagattgatattaacatt |
42112734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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