View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3353_high_3 (Length: 285)
Name: NF3353_high_3
Description: NF3353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3353_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 52511922 - 52512163
Alignment:
| Q |
25 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
124 |
Q |
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| T |
52511922 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
52512021 |
T |
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| Q |
125 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttcatatccaaggatgtggta |
224 |
Q |
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| T |
52512022 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttcatatccaaggatgtggta |
52512121 |
T |
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| Q |
225 |
gaagacgaagacgagtaatgattcaagtttgatatatcgatg |
266 |
Q |
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| T |
52512122 |
gcagacgaagacgagtaatggttcaagtttgatatatcgatg |
52512163 |
T |
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