View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3353_low_2 (Length: 536)
Name: NF3353_low_2
Description: NF3353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3353_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 191 - 524
Target Start/End: Complemental strand, 26966372 - 26966039
Alignment:
| Q |
191 |
aaatgtcattatcattgtattgcacaatagataaacatgtcatcaggaggaactaacccacccaaatgtccacccaatgatatggggaagaaggatgttg |
290 |
Q |
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| T |
26966372 |
aaatgttattatcattgtattgcacaatagataaacatgtcatcaggaggaactaacccacccaa------------tgatatggggaagaaggatgttg |
26966285 |
T |
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| Q |
291 |
catccactactactggacgtactcgcaagt------------ggcgcactcatctggctcctcaacatgttttagaccagcttatgcctatgccgccgac |
378 |
Q |
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| T |
26966284 |
catccactactactggacgtactcgcaagtatactcgcaagtggcgcactcatctggctcctcaacatgttttagaccagcttatgcctatgccgccgac |
26966185 |
T |
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| Q |
379 |
taaagatacacagactgggaaagatgttgcatccactgctactaggcctactcgcgaggaaattcgagtagacaagtctatacctatgccgacggctgca |
478 |
Q |
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| T |
26966184 |
taaagatacacagactgggaaagatgttgcatccactactactaggcctactcgccaggaaattcgagtagacaagtctatacctatgccgacggctgca |
26966085 |
T |
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| Q |
479 |
catatacagactccatctcctcatacatatgctccgcctccaccta |
524 |
Q |
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| T |
26966084 |
catatacagactccatctcctcatacatatgctccgcctccaccta |
26966039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 26966556 - 26966451
Alignment:
| Q |
17 |
tttgcttgactcaagtagcaaagacaattggatctgttatttgaattgggatgcccaaaacctactactgtcatctatctatcttttt-aaatcaaagtt |
115 |
Q |
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| T |
26966556 |
tttgcttgactcaagtagcaaagacaattggatctgttatttgaattgggatgcccaaaacctactactgtgatctatccatctttttaaaatcaaagtt |
26966457 |
T |
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| Q |
116 |
atgact |
121 |
Q |
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|||||| |
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| T |
26966456 |
atgact |
26966451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 26965770 - 26965703
Alignment:
| Q |
457 |
tatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccaccta |
524 |
Q |
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| T |
26965770 |
tatacctgtgccgacgactgcacatacacagattccatcttctcatacatatgctccgcctccaccta |
26965703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 524
Target Start/End: Complemental strand, 26965162 - 26965085
Alignment:
| Q |
447 |
tagacaagtctatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccaccta |
524 |
Q |
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| T |
26965162 |
tagaccagtttatacctatgccgatgactgcacatacacggactccatcttctcatacctatactctgcctccaccta |
26965085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 26965449 - 26965382
Alignment:
| Q |
457 |
tatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccaccta |
524 |
Q |
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||||||| |||||| | |||| |||| ||||| ||||||||||||||| |||| ||| |||||||||| |
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| T |
26965449 |
tatacctgtgccgatgactgcgcatacacagattccatctcctcatacctatgttccacctccaccta |
26965382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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