View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3353_low_3 (Length: 353)
Name: NF3353_low_3
Description: NF3353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3353_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 43954010 - 43954306
Alignment:
| Q |
1 |
atgtacatccagattatcaacttcctcttcacttcagtattctcactagatgtcgttttattactatctttgagcatcggtggaataataaattcatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43954010 |
atgtacatccagattatcaacttcctcttcacttcaatattctcactagatgtcgttttattactatctttgagcatcggtggaataataaattcatcct |
43954109 |
T |
|
| Q |
101 |
cttccgccccttccacttcagcatttatgttcattgttgtaatttgcaatcctggaattttgtccttaagaaaatataatacacttttaatgccttgttt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43954110 |
cttccgcaccttccacttcagcatttatgttcattgttgtaatttgcaatcctggaattttgtccttaagaaaatataatacacttttaatgccttgttt |
43954209 |
T |
|
| Q |
201 |
agttgcttcctcaatagaacttttcacctcgtcannnnnnncaaccttctcttcatgctcctgaatctcaactgaagattcattctccacctcagat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43954210 |
agttgcttcctcaatagaacttttcacctcgtcatttttttcaaccttctcttcatgctcctgaatctcaactgaagattcattctccaccttagat |
43954306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University