View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3353_low_5 (Length: 248)

Name: NF3353_low_5
Description: NF3353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3353_low_5
NF3353_low_5
[»] chr4 (4 HSPs)
chr4 (116-248)||(21800718-21800848)
chr4 (122-156)||(14269596-14269630)
chr4 (116-153)||(45893309-45893346)
chr4 (116-150)||(49421305-49421339)
[»] chr2 (2 HSPs)
chr2 (116-156)||(29463343-29463383)
chr2 (116-153)||(36657891-36657928)
[»] scaffold0445 (1 HSPs)
scaffold0445 (116-153)||(7122-7159)
[»] chr7 (3 HSPs)
chr7 (116-154)||(26469657-26469695)
chr7 (116-154)||(26546129-26546167)
chr7 (126-156)||(46463667-46463697)
[»] chr3 (1 HSPs)
chr3 (124-154)||(11217966-11217996)
[»] chr6 (1 HSPs)
chr6 (116-153)||(23660778-23660815)
[»] chr5 (1 HSPs)
chr5 (125-153)||(30739538-30739566)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 21800848 - 21800718
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagtatagtacatgcaagtaataaatatattatttaataagttgttaattnnnnnnnnnnttgtac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          ||||||    
T  21800848 gtctatcacccgtgcattgcacgggttaacacactagtatagtacatgcaagtaataaatatattattcaataagttgttaatt--aaaaaaaattgtac 21800751  T
Q  216 actccaagttcgaggtgaatattattcgacatc 248  Q
    |||||||||||||||||||||||||||| ||||    
T  21800750 actccaagttcgaggtgaatattattcggcatc 21800718  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 14269596 - 14269630
Alignment:
Q  122 cacccgtgcattgcacgggttaacacactagtata 156  Q
    |||||||||||||||||||||||||||||||||||    
T  14269596 cacccgtgcattgcacgggttaacacactagtata 14269630  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 45893309 - 45893346
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagt 153  Q
    |||||||||||| |||||||||||||||||||||||||    
T  45893309 gtctatcacccgcgcattgcacgggttaacacactagt 45893346  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 49421305 - 49421339
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacact 150  Q
    |||||||||||||||||||| ||||||||||||||    
T  49421305 gtctatcacccgtgcattgcgcgggttaacacact 49421339  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 29463383 - 29463343
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagtata 156  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29463383 gtctatcacccgtgcattgcacgggttaacacactagtata 29463343  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 36657928 - 36657891
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagt 153  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36657928 gtctatcacccgtgcattgcacgggttaacacactagt 36657891  T

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Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 7122 - 7159
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagt 153  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7122 gtctatcacccgtgcattgcacgagttaacacactagt 7159  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 26469695 - 26469657
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagta 154  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26469695 gtctatcacccgtgcatcgcaagggttaacacactagta 26469657  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 26546167 - 26546129
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagta 154  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26546167 gtctatcacccgtgcatcgcaagggttaacacactagta 26546129  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 46463667 - 46463697
Alignment:
Q  126 cgtgcattgcacgggttaacacactagtata 156  Q
    |||||||||||||||||||||||||||||||    
T  46463667 cgtgcattgcacgggttaacacactagtata 46463697  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 154
Target Start/End: Original strand, 11217966 - 11217996
Alignment:
Q  124 cccgtgcattgcacgggttaacacactagta 154  Q
    |||||||||||||||||||||||||||||||    
T  11217966 cccgtgcattgcacgggttaacacactagta 11217996  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 23660815 - 23660778
Alignment:
Q  116 gtctatcacccgtgcattgcacgggttaacacactagt 153  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  23660815 gtctatcacccgtgcattgcaccggttaacgcactagt 23660778  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 30739566 - 30739538
Alignment:
Q  125 ccgtgcattgcacgggttaacacactagt 153  Q
    |||||||||||||||||||||||||||||    
T  30739566 ccgtgcattgcacgggttaacacactagt 30739538  T

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