View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_high_10 (Length: 292)
Name: NF3354_high_10
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 3232439 - 3232230
Alignment:
| Q |
15 |
taatatcatgagctttgcattttaaaaaattgattctttttcttatatatnnnnnnnnnnnnncttaatcacaaatcatgacacaaatatccaaattgtc |
114 |
Q |
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| T |
3232439 |
taatatcatgagctttgcattttaaaaaattgattcgttttcttatatataaaaaaataaaaacttaatcacaaatcatgacacaaatatccaaattgtc |
3232340 |
T |
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| Q |
115 |
atttagatgaaaatgtagttatgcatcaaaatttgtgtgtttgtatgagatcaataatatatggcatctaattcaaacggtaatatattaaatgaactaa |
214 |
Q |
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| T |
3232339 |
atttagatgaaaatgtagttatgcatcaaaatttgtgtgtttgtatgagatcaataatatatggcatctaattcaaacggtaatatattaaatgaactaa |
3232240 |
T |
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| Q |
215 |
atgttagtac |
224 |
Q |
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|||||||||| |
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| T |
3232239 |
atgttagtac |
3232230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 3232899 - 3232820
Alignment:
| Q |
92 |
atgacacaaatatccaaattgtcatttagatgaaaatgtagttatgcatcaaaatttgtgtgtttgtatgagatcaataa |
171 |
Q |
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|||||||||||||||| |||||||| ||||| | ||| |||||||||| |||| ||||||||| |||||||||||||| |
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| T |
3232899 |
atgacacaaatatccagattgtcatctagataagaatatagttatgcaacaaatcttgtgtgttcttatgagatcaataa |
3232820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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